Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 >seq1 Length=2771824 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| || ||| || |||| ||| ||||| || || || Sbjct 1871773 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 1871832 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || ||||||||||| ||||| ||||| || ||||| ||| ||| || Sbjct 1871833 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 1871892 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 | | || | ||||||| | ||| ||||||| || | ||||||||||||| Sbjct 1871893 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 1871947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063032675200