Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq15 140 5e-28
>seq15
Length=714589
Score = 140 bits (154), Expect = 5e-28
Identities = 581/902 (64%), Gaps = 16/902 (2%)
Strand=Plus/Plus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
||||| || || || | |||||| | | ||||| || |||| || ||||| | | |
Sbjct 178398 TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTC 178457
Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980
|| | || | || | || || ||||| ||||| ||||||||||| || || ||
Sbjct 178458 CAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAG 178517
Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040
||||| | | | |||||| || || ||||| || || ||||| |||| |
Sbjct 178518 AGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAAA 178576
Query 80041 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
| |||| ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 178577 GACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || ||
Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696
Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 80217
||| || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 178754
Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277
|| || || || || | || ||||| || || || || | || || || |||||
Sbjct 178755 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 178814
Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAG 80335
|| ||||| || || |||||| | || || || |||||| |||||| | |
Sbjct 178815 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GTG 178872
Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 80394
| ||||| || || || || || || ||||| || || | |||| ||||| |||| | |
Sbjct 178873 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 178931
Query 80395 TACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAA 80453
|| ||||| || || || || || || | ||||| || || || |||||||| |
Sbjct 178932 TAGGTCTCGATGGCCTTCTCAATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 178990
Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513
|||||| || || | || ||| |||| ||||| | | || || || |
Sbjct 178991 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAG 179050
Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573
|| || |||||||| | | ||| ||||| || ||||| | ||| ||||||||||
Sbjct 179051 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 179110
Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGG-AGAATGTT 80632
| || | | || | | || | | || | || || || || | | ||
Sbjct 179111 CTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTCTCTT 179170
Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692
| || || || || || ||||||||| | | ||| || | || | ||| | || |
Sbjct 179171 T-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCTTCT 179229
Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752
| || | |||||| ||||||||||| || || | || || | || || || || ||||
Sbjct 179230 TGGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGGGAT 179289
Query 80753 GT 80754
||
Sbjct 179290 GT 179291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718267399375840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |