Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq15 141 1e-28
>seq15
Length=714589
Score = 141 bits (156), Expect = 1e-28
Identities = 742/1160 (64%), Gaps = 32/1160 (3%)
Strand=Plus/Plus
Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753
|| ||||| ||| |||| || |||||||| ||||||| || | | | || | | |||
Sbjct 178148 CAGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAAT 178207
Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813
|||||||| | || | |||||| || | || | || || ||||| |||
Sbjct 178208 CTCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 178267
Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|| || ||||| ||||| ||||| || ||||||| || |||| | || | ||| ||
Sbjct 178268 GCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGC 178327
Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCT-CTT-TCGTAT-T 71929
| ||| | | | || | | ||| | | ||| |||| ||| ||||| |
Sbjct 178328 GTACCAAAGCTTTTGTGCGCGAAC---AGTCTCGCGGCCCTTGTTCTGCTTCTCGTAGCT 178384
Query 71930 GT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988
| ||| | | ||||| || || || | ||| | | | ||||| || || |||
Sbjct 178385 CTCGTACAGGGCC--TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTC 178442
Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048
|| ||||| | || ||| | || | || | || || ||||| ||||| |||||||||
Sbjct 178443 GGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATC 178502
Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108
|| || || || ||||| | | | |||||| || || ||||| ||
Sbjct 178503 CACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 178562
Query 72109 TCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167
|| ||||| |||| | | |||| ||||| || || | ||| ||||| | | || ||
Sbjct 178563 TCAAGGAA-GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 178621
Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227
|| ||||| || ||||| || | || | ||| ||||| || || || | | ||| ||
Sbjct 178622 GCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 178681
Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 72285
||| | ||| || |||| || || || || ||| || ||| | ||||||||
Sbjct 178682 AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCG 178741
Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345
||| ||| || || || || || || | || ||||| || || || || |
Sbjct 178742 GTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGT 178799
Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405
|| || || ||||| || || || || ||| |||||| | || || || ||||||
Sbjct 178800 GTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATT 178859
Query 72406 --TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 72463
|||||| | || ||||| || || || || || || ||||| || || | ||||
Sbjct 178860 TGTGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTT 178917
Query 72464 CAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTAC 72521
||||| |||| | ||| ||||| || || || || || || | || || || ||
Sbjct 178918 GAGACATGTAG-TCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCG-TGAATGCCAAC 178975
Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581
|| |||||||| | ||| || || || | || ||| |||| ||||| | |
Sbjct 178976 AGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAG 179035
Query 72582 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 72641
|| || || | || || |||||||| | | ||| ||||| || ||||| |
Sbjct 179036 ATATGAACGCTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGAC 179095
Query 72642 AATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGA 72698
||| |||| ||||| | || | | | | | ||| || || ||| | ||
Sbjct 179096 GATAGCCGAGTTGAGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGA 179152
Query 72699 AATAATCGG-AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCA 72757
|| || || | | ||| || || || || || ||||||||| | | ||| || | |
Sbjct 179153 GATCATGGGTTGTCTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAA 179211
Query 72758 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 72817
| | ||| | || || || | |||||| ||||||||||| || || | || || |
Sbjct 179212 CGAGAGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGA 179271
Query 72818 GAATGGCATAATCTGGATGT 72837
| || || || || ||||||
Sbjct 179272 GGATTGCGTAGTCGGGATGT 179291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671137891278560
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