Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-28 >seq15 Length=714589 Score = 141 bits (156), Expect = 1e-28 Identities = 742/1160 (64%), Gaps = 32/1160 (3%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 || ||||| ||| |||| || |||||||| ||||||| || | | | || | | ||| Sbjct 178148 CAGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAAT 178207 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| | || | |||||| || | || | || || ||||| ||| Sbjct 178208 CTCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 178267 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || || ||||| ||||| ||||| || ||||||| || |||| | || | ||| || Sbjct 178268 GCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGC 178327 Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCT-CTT-TCGTAT-T 71929 | ||| | | | || | | ||| | | ||| |||| ||| ||||| | Sbjct 178328 GTACCAAAGCTTTTGTGCGCGAAC---AGTCTCGCGGCCCTTGTTCTGCTTCTCGTAGCT 178384 Query 71930 GT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988 | ||| | | ||||| || || || | ||| | | | ||||| || || ||| Sbjct 178385 CTCGTACAGGGCC--TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTC 178442 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||| | || ||| | || | || | || || ||||| ||||| ||||||||| Sbjct 178443 GGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATC 178502 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || || || || ||||| | | | |||||| || || ||||| || Sbjct 178503 CACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 178562 Query 72109 TCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 || ||||| |||| | | |||| ||||| || || | ||| ||||| | | || || Sbjct 178563 TCAAGGAA-GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 178621 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || ||||| || ||||| || | || | ||| ||||| || || || | | ||| || Sbjct 178622 GCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 178681 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 72285 ||| | ||| || |||| || || || || ||| || ||| | |||||||| Sbjct 178682 AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCG 178741 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 ||| ||| || || || || || || | || ||||| || || || || | Sbjct 178742 GTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGT 178799 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 || || || ||||| || || || || ||| |||||| | || || || |||||| Sbjct 178800 GTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATT 178859 Query 72406 --TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 72463 |||||| | || ||||| || || || || || || ||||| || || | |||| Sbjct 178860 TGTGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTT 178917 Query 72464 CAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTAC 72521 ||||| |||| | ||| ||||| || || || || || || | || || || || Sbjct 178918 GAGACATGTAG-TCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCG-TGAATGCCAAC 178975 Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581 || |||||||| | ||| || || || | || ||| |||| ||||| | | Sbjct 178976 AGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAG 179035 Query 72582 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 72641 || || || | || || |||||||| | | ||| ||||| || ||||| | Sbjct 179036 ATATGAACGCTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGAC 179095 Query 72642 AATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGA 72698 ||| |||| ||||| | || | | | | | ||| || || ||| | || Sbjct 179096 GATAGCCGAGTTGAGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGA 179152 Query 72699 AATAATCGG-AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCA 72757 || || || | | ||| || || || || || ||||||||| | | ||| || | | Sbjct 179153 GATCATGGGTTGTCTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAA 179211 Query 72758 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 72817 | | ||| | || || || | |||||| ||||||||||| || || | || || | Sbjct 179212 CGAGAGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGA 179271 Query 72818 GAATGGCATAATCTGGATGT 72837 | || || || || |||||| Sbjct 179272 GGATTGCGTAGTCGGGATGT 179291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137891278560