Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4 289 4e-73
seq15 154 2e-32
>seq4
Length=2069545
Score = 289 bits (320), Expect = 4e-73
Identities = 582/856 (68%), Gaps = 23/856 (3%)
Strand=Plus/Minus
Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081
||| | |||||||| ||||| |||| || || ||||| | || ||| |||| || |||
Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757
Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141
|||||||| |||| ||| | | ||| | | || ||||| || || || |||
Sbjct 1053756 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 1053697
Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200
| | |||||||| || | ||||||||| || |||||||| || || ||||| |||||
Sbjct 1053696 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAG-CGATT 1053638
Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260
|||| || | || || |||| ||||| ||||| |||||||||||||| ||
Sbjct 1053637 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 1053578
Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317
|||||| ||||| || | |||||| || || |||| |||||| |||| || |||
Sbjct 1053577 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCA 1053518
Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377
|| | || ||||| ||||| ||||||| | || | || || || ||||| |
Sbjct 1053517 GCGCAGGTAC---CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 1053461
Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437
|||| | || |||||| ||| | || || | | |||| || | || || |||||
Sbjct 1053460 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 1053401
Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497
|||||| || ||||| |||||||| ||| ||| || ||||||| |||||||||||
Sbjct 1053400 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 1053341
Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557
|||||| || |||||||| || || | |||||| | || || || ||||||||| |
Sbjct 1053340 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 1053281
Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617
||| ||||| ||| || || || || ||| | |||| || ||||
Sbjct 1053280 GCACACCGACTTCGCCTGCCTTCTCTT------CTCTCT---CCTCGAGAACAAGCCCAG 1053230
Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677
| || |||| || | || || ||||| ||| || || ||||| | |
Sbjct 1053229 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 1053170
Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737
||| | ||||| | || | ||||||||| | || |||||| | ||||| ||
Sbjct 1053169 CGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGA 1053110
Query 125738 GTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAA 125794
||| || || || ||||| |||| | | ||| || |||| | ||| ||||||
Sbjct 1053109 GTTCGTCGCTGACCGTCTGCTGT---TGGCCCTCGGCAACGTCAAGGTCTACCACGCCAC 1053053
Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854
|| ||||| || |||||| | ||| || || | |||||||||||||| ||||||||
Sbjct 1053052 CAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAA 1052993
Query 125855 GAAGGTCAGCGAGTAC 125870
| ||| |||| |||
Sbjct 1052992 GCGCGTCGGCGACTAC 1052977
>seq15
Length=714589
Score = 154 bits (170), Expect = 2e-32
Identities = 321/473 (68%), Gaps = 4/473 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || ||||| || | ||| ||||| | || || |||||||| |||
Sbjct 178639 CAGGGTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGAC 178580
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| |||| ||| | || ||||||| ||| ||| || |||| || || | ||
Sbjct 178579 GTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGAT 178520
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || || || ||| | || || | ||||||||||| ||| | ||| ||| ||
Sbjct 178519 CTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACAACGGCAAC 178460
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || |||||||| || || || || || ||||| || || ||||| ||
Sbjct 178459 TGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTC 178400
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | ||||||| | || | | || ||||| ||| ||||
Sbjct 178399 GAGGCCCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCGCGAGACTGTTCG-CGCACA 178341
Query 97175 AGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
| | || ||| | |||| || ||| ||| ||| |||||||| | || | || || |
Sbjct 178340 AAAGCTTTGGTACGCCATTCTTGA-GGCGCAGACCGAGACTGGTAACCCCTTTATGCTTT 178282
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
||||||| | || ||||| |||||||| || | || |||||| ||||||
Sbjct 178281 ACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCA 178222
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
| ||||||| || ||||| |||||| | |||| || ||| || ||||||
Sbjct 178221 ACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGTCGCCGTTTGC 178169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057754934560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |