Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
seq3 82.4 6e-11
>seq1
Length=2771824
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| || || ||||| || | | ||| | |||| ||
Sbjct 1871304 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 1871363
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||| ||||| || |||| || | |||||| || || | ||||| |||||
Sbjct 1871364 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 1871423
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || ||||| | | ||| || |||| || ||| ||| | |||||||| ||
Sbjct 1871424 GATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTT 1871483
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||| |||||||| || |||||
Sbjct 1871484 TCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
>seq3
Length=2234992
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTGGT 21196
|| |||||||| || |||||||| ||||| || | ||||| || ||||| | ||| |
Sbjct 1600749 GAAGTTGCCCAAGTCACCGACGTGGCGCTCCTCGTCCTCGGGGGCACCGTGTGTCTTGTT 1600690
Query 21197 GCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256
| | ||||| ||||| |||||||| ||||||||||| || ||||||| || |||
Sbjct 1600689 GTGG-GGGTTGAAGTGGGGACCGGCGGATGTGCAGCCGTTTGTGTTGTCGCCAAAGGCGT 1600631
Query 21257 GAACGTG 21263
| |||||
Sbjct 1600630 GGACGTG 1600624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414572011793464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |