Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq3 82.4 6e-11 >seq1 Length=2771824 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || ||||| || | | ||| | |||| || Sbjct 1871304 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 1871363 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || |||| || | |||||| || || | ||||| ||||| Sbjct 1871364 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 1871423 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||||| | | ||| || |||| || ||| ||| | |||||||| || Sbjct 1871424 GATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTT 1871483 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| |||||||| || ||||| Sbjct 1871484 TCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 >seq3 Length=2234992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTGGT 21196 || |||||||| || |||||||| ||||| || | ||||| || ||||| | ||| | Sbjct 1600749 GAAGTTGCCCAAGTCACCGACGTGGCGCTCCTCGTCCTCGGGGGCACCGTGTGTCTTGTT 1600690 Query 21197 GCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 | | ||||| ||||| |||||||| ||||||||||| || ||||||| || ||| Sbjct 1600689 GTGG-GGGTTGAAGTGGGGACCGGCGGATGTGCAGCCGTTTGTGTTGTCGCCAAAGGCGT 1600631 Query 21257 GAACGTG 21263 | ||||| Sbjct 1600630 GGACGTG 1600624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572011793464