Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=2771824 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||||||| | |||||| ||||| || | ||| || || | | || ||| | || Sbjct 1871304 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGCGTTCGGCCGTCT 1871361 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || | || || | | ||||| || ||||| ||||| || ||||| Sbjct 1871362 TCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 1871421 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGT 94974 | || || | ||| || | ||| ||||| || | ||||| || | || ||||| Sbjct 1871422 TGGATCTTGGACTTTACATTGTCGATCGTGTC-GCTAGACTCGACTTCCAATGTAATGGT 1871480 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||||||| || |||||||||||||| Sbjct 1871481 CTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| || || |||||||| | ||| || ||| | ||| | || |||| ||| Sbjct 1871538 GTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTG 1871597 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 |||||| | ||||| | | || || || ||||||||||| || ||||| | || || Sbjct 1871598 CTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTT 1871657 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTTTTCCAG 94982 | ||||||| | | | |||||| || || || || || | ||||||||| || |||| Sbjct 1871658 CGACTTGACGTTGTCAATAGTGTC-GCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAG 1871716 Query 94983 TAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || ||||| ||||| Sbjct 1871717 TCAGGGTCTTGACGAAGATTTGCAT 1871741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290325832160