Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq17 114 2e-21
seq40 104 4e-18
>seq17
Length=664729
Score = 114 bits (126), Expect = 2e-21
Identities = 216/328 (66%), Gaps = 55/328 (17%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| ||||
Sbjct 94305 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACTAAGCCCGCTA 94247
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAA------------------GCGTG------ 16526
|||||||||| |||||||||||||| ||||| || ||
Sbjct 94246 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCAGCCAGTAAGCATGCCCAAC 94187
Query 16527 ----------TCT-------------------CTGGATTGGTCTATGAAGAGATTCGTGA 16557
||| ||| | || |||| ||||||| ||||
Sbjct 94186 ATCGTCGCTATCTAGGACAAATCCTAACATGACTGCAGTGATCTACGAAGAGACCCGTGG 94127
Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617
||| | |||| ||||||| ||| |||||||| ||| || || ||| || ||||||||
Sbjct 94126 TGTCCTCAAGACCTTCCTCGAGAGCGTTATCCGTGACGCCGTCACCTACACTGAGCACGC 94067
Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAA 16677
|| || ||||||||||||||| | || | ||||| || | || || || |||||||
Sbjct 94066 CAAGCGCAAGACTGTCACCTCCCTCGACGTTGTCTACGCTCTCAAGCGCCAGGGCCGTAC 94007
Query 16678 GATTTATGGTTTTGGAAGTTAATCTTCT 16705
| || ||||| || ||||| | |||
Sbjct 94006 CCTCTACGGTTTCGGTGGTTAAACATCT 93979
>seq40
Length=173523
Score = 104 bits (114), Expect = 4e-18
Identities = 84/99 (85%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||| |||||| || |||||||| || ||||| ||||| |||||
Sbjct 165038 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCCGCTAT 164980
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||||||||| || ||||||||||| ||||||||| ||||
Sbjct 164979 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 164941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075057368108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |