Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq17 114 2e-21 seq40 104 4e-18 >seq17 Length=664729 Score = 114 bits (126), Expect = 2e-21 Identities = 216/328 (66%), Gaps = 55/328 (17%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| |||| Sbjct 94305 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACTAAGCCCGCTA 94247 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAA------------------GCGTG------ 16526 |||||||||| |||||||||||||| ||||| || || Sbjct 94246 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCAGCCAGTAAGCATGCCCAAC 94187 Query 16527 ----------TCT-------------------CTGGATTGGTCTATGAAGAGATTCGTGA 16557 ||| ||| | || |||| ||||||| |||| Sbjct 94186 ATCGTCGCTATCTAGGACAAATCCTAACATGACTGCAGTGATCTACGAAGAGACCCGTGG 94127 Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| | |||| ||||||| ||| |||||||| ||| || || ||| || |||||||| Sbjct 94126 TGTCCTCAAGACCTTCCTCGAGAGCGTTATCCGTGACGCCGTCACCTACACTGAGCACGC 94067 Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAA 16677 || || ||||||||||||||| | || | ||||| || | || || || ||||||| Sbjct 94066 CAAGCGCAAGACTGTCACCTCCCTCGACGTTGTCTACGCTCTCAAGCGCCAGGGCCGTAC 94007 Query 16678 GATTTATGGTTTTGGAAGTTAATCTTCT 16705 | || ||||| || ||||| | ||| Sbjct 94006 CCTCTACGGTTTCGGTGGTTAAACATCT 93979 >seq40 Length=173523 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 165038 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCCGCTAT 164980 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 164979 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 164941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075057368108