Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq15 141 1e-28
>seq15
Length=714589
Score = 141 bits (156), Expect = 1e-28
Identities = 584/905 (65%), Gaps = 22/905 (2%)
Strand=Plus/Plus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
||||| || || || | |||| | | | ||||| || || | ||| ||||| | | |
Sbjct 178398 TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTC 178457
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
|| | |||| || | || || ||||| ||||| ||||||||||| || || ||
Sbjct 178458 CAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAG 178517
Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317
||||| | | | ||||| || || ||||| || || ||||| |||| |
Sbjct 178518 AGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAAA 178576
Query 63318 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376
| |||| ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 178577 GACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636
Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436
||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| ||
Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696
Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63494
| | || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 178754
Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554
|| || || || || | || ||||| || || || || | ||||| || || ||
Sbjct 178755 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 178814
Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAG 63612
|| ||||| || || |||||| | || || || |||||| |||||| | |
Sbjct 178815 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GTG 178872
Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63671
| ||||| || || || || || || ||||| || || | |||| ||| | |||| | |
Sbjct 178873 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 178931
Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730
|| ||||| || || || || || || | ||||| || || || |||||||| |
Sbjct 178932 TAGGTCTCGATGGCCTTCTCAATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 178990
Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790
|||||| || || | || ||| |||| |||||| | | || || || |
Sbjct 178991 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAG 179050
Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850
|| || |||||||| | | ||| ||||| || ||||| | ||| ||||||||||
Sbjct 179051 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 179110
Query 63851 TTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGAAATAATCGG-AGAAT 63906
| || | | | | | ||| || || ||| | || || || || | |
Sbjct 179111 CTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTCT 179167
Query 63907 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63966
||| || || || || || ||||||||| | | ||| || | || | ||| | |
Sbjct 179168 CTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCT 179226
Query 63967 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64026
| || || | |||||| ||||||||||| || || | || || || || || || || |
Sbjct 179227 TCTTGGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGG 179286
Query 64027 GATGT 64031
|||||
Sbjct 179287 GATGT 179291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622945985252960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |