Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-28 >seq15 Length=714589 Score = 141 bits (156), Expect = 1e-28 Identities = 584/905 (65%), Gaps = 22/905 (2%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||| || || || | |||| | | | ||||| || || | ||| ||||| | | | Sbjct 178398 TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTC 178457 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || | |||| || | || || ||||| ||||| ||||||||||| || || || Sbjct 178458 CAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAG 178517 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | | ||||| || || ||||| || || ||||| |||| | Sbjct 178518 AGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAAA 178576 Query 63318 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | |||| ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 178577 GACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| || Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63494 | | || || || || ||| || ||| | |||||||| | | ||| || Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 178754 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || || | || ||||| || || || || | ||||| || || || Sbjct 178755 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 178814 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAG 63612 || ||||| || || |||||| | || || || |||||| |||||| | | Sbjct 178815 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GTG 178872 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63671 | ||||| || || || || || || ||||| || || | |||| ||| | |||| | | Sbjct 178873 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 178931 Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || ||||| || || || || || || | ||||| || || || |||||||| | Sbjct 178932 TAGGTCTCGATGGCCTTCTCAATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 178990 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| || || | || ||| |||| |||||| | | || || || | Sbjct 178991 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAG 179050 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 || || |||||||| | | ||| ||||| || ||||| | ||| |||||||||| Sbjct 179051 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 179110 Query 63851 TTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGAAATAATCGG-AGAAT 63906 | || | | | | | ||| || || ||| | || || || || | | Sbjct 179111 CTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTCT 179167 Query 63907 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63966 ||| || || || || || ||||||||| | | ||| || | || | ||| | | Sbjct 179168 CTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCT 179226 Query 63967 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64026 | || || | |||||| ||||||||||| || || | || || || || || || || | Sbjct 179227 TCTTGGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGG 179286 Query 64027 GATGT 64031 ||||| Sbjct 179287 GATGT 179291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945985252960