Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq15 120 3e-22 seq4 107 2e-18 >seq15 Length=714589 Score = 120 bits (132), Expect = 3e-22 Identities = 422/647 (65%), Gaps = 19/647 (3%) Strand=Plus/Plus Query 148250 CTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACA 148309 |||||| | ||||| ||| |||||||||||| || ||| |||| | || || || Sbjct 178376 CTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 178435 Query 148310 CTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTT-TACCCTCTTCATAAACAGAT 148368 ||||| |||||||| | || ||| || || |||||| || | |||||| || || | Sbjct 178436 CTCGTTCGGGCACATGAGTGTCCAGTTGCC-GTTGTCTTGGACACGCTTCATGAAGAGGT 178494 Query 148369 CAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC---GGCACCCATAT 148425 |||| |||||| ||| | | ||||||||||| | ||||| | | | | Sbjct 178495 CAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCT 178554 Query 148426 TGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGTCA 148485 ||||| || || | || ||| ||||| |||||||| ||||||| ||| | || | Sbjct 178555 TGCGC---AGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGA 178611 Query 148486 TGGCGCCT---TTCCTTTTACCTCCTTGATCGACATGGCGTAGCA-TGCTATTAAAAACA 148541 ||| ||| | | || || || || ||||||| ||| |||| || | || | ||| Sbjct 178612 AGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACATAGCG-AGCAGTGTTGTTGTATACA 178670 Query 148542 CGCA--ATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTTACTATTGG 148599 || | ||| || | || | |||||||| ||| | || | | Sbjct 178671 CGGAGCATG--GGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAG 178728 Query 148600 TGGCGCGAATTTGAGTG-ACATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCA 148658 | || ||||| | ||| || || ||||| || ||||| || || || |||| ||| Sbjct 178729 TAGCACGAATGCG-GTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCA 178787 Query 148659 CAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGGTAG 148718 || |||||||| | || ||||||| || |||||||| | |||| | ||| || Sbjct 178788 CAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAG 178847 Query 148719 CACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGACTAGCGTGAGTG 148778 || || |||||||| || | |||| | || | || || ||||| ||| Sbjct 178848 CATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTG 178907 Query 148779 AACAGCTTTGCCCGCATCAATCTATAGGATTCGATAGCGCTTTCGATGTCATCACCATGA 148838 || |||| ||| | |||| ||||| || | || ||||||||||| ||| Sbjct 178908 AAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGA 178967 Query 148839 ATCTGTAGAGCTACACGCATCAGCATGTGTTGAGGCCTCTCGACGAC 148885 || | ||| |||||||| ||||||||||| || | |||| |||| Sbjct 178968 ATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGAC 179014 >seq4 Length=2069545 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| ||||| || || || || || || || ||||| || | ||||| ||||| | Sbjct 1052974 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 1053033 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| || ||||| || || | | || | | |||| ||| ||| | | |||| ||| Sbjct 1053034 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 1053093 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATG-GA-TTGCGAATTCATGCCCAACATA 119819 || || || || ||||||||||||| ||||||| || | ||| |||||||| | || | Sbjct 1053094 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCG--TTCATGCCGAGCAGA 1053151 Query 119820 GCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 ||| |||| || | | | ||||| |||| ||||| ||||| ||||| Sbjct 1053152 GCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTC 1053201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661466608320