Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15 336 6e-87 >seq15 Length=714589 Score = 336 bits (372), Expect = 6e-87 Identities = 1054/1622 (65%), Gaps = 18/1622 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| |||| || ||| ||| || || || | ||||| ||||| || Sbjct 178909 TTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCA 178850 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || |||||| || || | |||||||| |||| Sbjct 178849 TGCTTCCTCATCGACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACC 178790 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || ||||| ||||| | | || | ||| ||||||| Sbjct 178789 TGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTCAACG-TGCACCGCATTCGTGC 178731 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||| | ||||| ||| || || || || |||||||||| | Sbjct 178730 TACTGG-CTCATACATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCC 178672 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| | |||| ||||| | || |||||||||||||| |||||| ||| || | Sbjct 178671 GTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGCCCAGGTGCCT 178612 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || || |||||||| || || || | |||| || ||||| || || || | Sbjct 178611 TCGCCATCTACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGA 178552 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || || ||||| ||||| || || ||| || |||||| Sbjct 178551 ACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCCCTGTGGATTCCTGACC 178492 Query 363965 ATTTTATGAAGCGCGTGGAGG-CAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAAT 364021 || |||||||| || | | || | | || ||| ||||| | ||||| |||| | Sbjct 178491 TCTTCATGAAGCGTGTCCAAGACA---ACGGCAACTGGACACTCATGTGCCCGAACGAGT 178435 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || ||||||| | ||||| || | | || || ||||| | || || Sbjct 178434 GCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAGGCCCTGTACGAGAGCTACGAGA 178375 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | || |||| || |||| ||| |||||| ||||| |||| ||||| | || Sbjct 178374 AGCAGAACAAGGGCCGCGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATTCTTGAGG 178315 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 |||||| ||||| || | |||| |||| | ||||| || | |||||||||||| || Sbjct 178314 CGCAGACCGAGACTGGTAACCCCTTTATGCTTTACAAGGACGCTTGCAACCGCAAGAGCA 178255 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| ||||| | || |||| |||| | || || |||||| | || ||| Sbjct 178254 ACCAGAAGAACCTCGGTACCA-TCCGCAGCTCCAACTTGTGCACTGAGATTGTGGAGTAC 178196 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || ||||| || ||| ||||| || ||| | || || | || || || | ||||| Sbjct 178195 ACTGCTCCTGATGAGGTCGCCGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTC 178136 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374 || | ||| |||||| | || | || | || || || | || || Sbjct 178135 GACTACAAGGCCGGTGTGTTTGACTTCAAGAAGCTCCACGAAGTCACACAAGTTGTCACC 178076 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCT 364434 |||| | ||||| | ||||| || | || || | || || || Sbjct 178075 CGCAACTTGAACAAGATCATCGAAGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGC 178016 Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494 || | || || || || || ||| | ||||| || || || ||||| | || | Sbjct 178015 AACTTCCGCCACCGACCCATCGGTATGGGTGTTCAAGGTCTTGCTGATGCCTTCCTCGCA 177956 Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554 ||| | | || || || || ||| || || | | |||||||| || Sbjct 177955 CTCCGCCTTCCTTTCGAGTCAGACGAAGCTAAGAAGCTCAACATCCAAATCTTTGAGACC 177896 Query 364555 ATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCT 364614 || || ||| || | ||| | || || || | ||||| || ||| Sbjct 177895 ATCTACCATGCTGCTCTCACTTCCTCATGCGACATCGCAAAGGAGCTTGGTCCTTACAAG 177836 Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 || || || || || || | || ||||| | |||||| ||| | |||||||||||| Sbjct 177835 ACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACG 177776 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 || ||| || ||| |||||| | || || || |||| ||| ||| Sbjct 177775 CCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTGCGC 177716 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | | || |||||||| || || || ||| ||||||| || || |||||| Sbjct 177715 AACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAAC 177656 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||||||||||| || | || ||| | ||||| ||||| || || | || || || Sbjct 177655 GAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTC 177596 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || || | | ||||||| ||| |||| || |||||| ||| | | Sbjct 177595 CAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAAC 177536 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| ||||||||||| | ||||| | | ||||| | || || Sbjct 177535 ATGAAGAACCGTATCATCGCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAG 177476 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034 || ||| | ||||||| ||||| ||||| || || ||||| ||||||| ||| Sbjct 177475 GAGACAAAGACACTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGAATCATTGAGATG 177416 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 || || || || ||||||||||| ||| |||||| | ||| | ||||| || Sbjct 177415 GCCGCTGACCGTGGTGCTTTTATTGACCAGTCTCAGTCGCTGAACATCCACATGAAGGAG 177356 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | |||| | || || ||||| || || ||||| | ||||| ||||| Sbjct 177355 CCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACT 177296 Query 365155 GG 365156 || Sbjct 177295 GG 177294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350994921992