Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq15 192 6e-44
seq4 150 2e-31
seq1 107 2e-18
seq3 84.2 2e-11
>seq15
Length=714589
Score = 192 bits (212), Expect = 6e-44
Identities = 923/1451 (64%), Gaps = 45/1451 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| ||||| || || | ||||| || |||| | ||| || ||| | ||
Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || ||||||| |||||||| || || | || | || || |||||| || |
Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| | || ||||||| ||||||| || | ||||| || | |||| |||||
Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| ||| ||| | || | |||||| |||||||| | || |||| | ||||
Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 177824
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355
|||| ||| ||||| | ||||| | || |||| ||||| | ||||
Sbjct 177825 CCTTCGTAGGTCTTGTAA--GGACCAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGAG 177882
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415
| | || || ||||| ||||| |||||||| | | ||||| || ||||
Sbjct 177883 CAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGA 177942
Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475
| || | ||| || | || ||||| || || || || | |||| |||||||| |
Sbjct 177943 AAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGTC 178002
Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535
| || | |||||| | ||| |||| ||| || | || ||||| || |
Sbjct 178003 GGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGATCT 178062
Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA- 145594
| |||||||| || || || | ||| | | | | ||| | ||||||||| |
Sbjct 178063 TGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACAC 178122
Query 145595 --GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652
|||| || |||| | | | | | ||| | || ||||| || ||||| ||
Sbjct 178123 CGGCCTTGTAGTCGACAAAAGA---AGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCGA 178179
Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712
||| || | | |||| | || ||||| | |||||| ||| | |||||| |
Sbjct 178180 CCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTAC 178239
Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772
| || || | ||| || || || | |||||| ||||||||||| ||||| | || |
Sbjct 178240 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTAC 178299
Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCT--GCGCACGCACCTGCTG 145830
||||||| ||||| ||| | || || ||| | | | || || || ||
Sbjct 178300 CAGTCTCGGTCTGCGCCTCAAGAATGG--CGTACCAAAGCTTTTGTGCGCGAACAGTCTC 178357
Query 145831 CTGGTAGCGGCCCTC-TTCT-----TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884
|||||||| |||| ||||| || ||| || |||| || | |||
Sbjct 178358 ------GCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACC 178411
Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944
|||| ||||| ||||| || |||| ||| || ||||| || | ||| ||||||| |
Sbjct 178412 GTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTC 178471
Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004
| ||| |||| ||| || | || || | |||||| ||||| | | ||||| ||
Sbjct 178472 TTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCG 178531
Query 146005 GCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063
| ||||| || ||| | || || | ||| | | | ||| ||| |||||||
Sbjct 178532 GACCTCCTCCTTGCCGTGGTTCTTGCG-CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 178590
Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGAC 146120
| || || | |||| ||||| ||| ||| || ||| ||||||||||| || | |
Sbjct 178591 ATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACATAGC 178650
Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT-- 146178
| | ||||||| | || || | |||||| || ||| | | | ||||| ||
Sbjct 178651 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGC 178710
Query 146179 -AGAGTT-TATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236
| | | ||| | ||| | || | || || || || | ||| | ||||||
Sbjct 178711 CACCGATGTAT----GAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCA 178766
Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296
|| |||||| || || ||| ||| || ||||| |||||||| ||||| ||
Sbjct 178767 GCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCC 178826
Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354
|||| ||| ||| || ||||| || |||| || | || || ||||| ||
Sbjct 178827 TCCTTC--ATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGA 178884
Query 146355 ACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATC-ATCCGATACGTTTCGATA 146413
|||||||||| ||||| || || ||| | ||| | || || || |||||
Sbjct 178885 ACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCG-TAGGTCTCGATG 178943
Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473
|| | | |||||| || || |||||||| | ||| || ||||||||||||||||| ||
Sbjct 178944 GCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGG 179003
Query 146474 CGCTCCGCCAC 146484
||||| || ||
Sbjct 179004 CGCTCGGCGAC 179014
>seq4
Length=2069545
Score = 150 bits (166), Expect = 2e-31
Identities = 350/518 (68%), Gaps = 15/518 (3%)
Strand=Plus/Minus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143
|| || ||| | |||||||| |||||||||| || |||||| | || | | |
Sbjct 1053486 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC 1053427
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
|| |||||| | || | || || || || ||| ||||| |||| || || |
Sbjct 1053426 ACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCT 1053367
Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262
|| ||| ||||||| | |||| || | || | | |||||||| || || || |||
Sbjct 1053366 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCCGGTCTAACATTCTCCAA 1053308
Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG---TCTCTACTATAA 46319
|||||| || || || ||||||||| |||| || ||||| || || ||||| || |
Sbjct 1053307 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCT 1053248
Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC-ATGTTCAAGGAGGCGG 46378
| |||| | || | | ||| || || | || | |||| || ||| || || |
Sbjct 1053247 C-CTCGAGAACAAGCCCAGC-----CCAGAGTCTGT-CAGAGCTATCATCACTGAAGCCG 1053195
Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG 46438
| | |||||| ||||||| || | | |||||| || || ||||| ||||||||||
Sbjct 1053194 TCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACG 1053135
Query 46439 C-ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497
| || ||| ||||| | ||||||||||| || || ||||| ||||| || || |
Sbjct 1053134 CTACTCTCA-TGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGC 1053076
Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557
| ||| | ||||| ||| || || || || ||| | ||||| || ||||
Sbjct 1053075 AACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCT 1053016
Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
|| || || || || ||||| |||||||||||||| ||
Sbjct 1053015 GGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1052978
>seq1
Length=2771824
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| ||||| || || | || |||||||| || |||||||| ||
Sbjct 1871287 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 1871346
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || |||||||| || ||| | || | |||||||||||| ||||||
Sbjct 1871347 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 1871406
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | || | || ||| | |||||||
Sbjct 1871407 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACT 1871466
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| || ||||| ||||| || || || ||||||||
Sbjct 1871467 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||| || || || | || | || ||||||||||| |||||||| |||
Sbjct 1871515 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1871574
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || | |||||| || ||| |||| | |||||| |||||||||||
Sbjct 1871575 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 1871634
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||||| | || | ||| ||| | || || |
Sbjct 1871635 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 1871694
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || || || ||||| || |||||
Sbjct 1871695 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || || | ||| | ||| || ||||| || |||||||| ||| |
Sbjct 1872024 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 1872083
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| ||| |||| || ||||||||||| || ||
Sbjct 1872084 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 1872143
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||| || | ||||| |
Sbjct 1872144 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 1872203
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| ||| | ||| || |||||
Sbjct 1872204 TCGAGGGTGATGGTCTTTCCGGT 1872226
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||| || || || | || | || |||||||| ||||||||||| ||| |
Sbjct 1871743 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1871802
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| || ||||| || ||| |||| | || ||||| |||||||||
Sbjct 1871803 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 1871862
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 1871863 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 1871922
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|| | || | ||| || |||||
Sbjct 1871923 TCAAGAGTGATGGTCTTGCCGGT 1871945
>seq3
Length=2234992
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || || || | ||| |||||||| || |||||||| ||
Sbjct 1534098 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1534157
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| ||
Sbjct 1534158 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 1534217
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 1534218 ATGCCCTCCTTGTC 1534231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472011879575040
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