Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq15 192 6e-44 seq4 150 2e-31 seq1 107 2e-18 seq3 84.2 2e-11 >seq15 Length=714589 Score = 192 bits (212), Expect = 6e-44 Identities = 923/1451 (64%), Gaps = 45/1451 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | ||||| || |||| | ||| || ||| | || Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | || | || || |||||| || | Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||||| ||||||| || | ||||| || | |||| ||||| Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || ||| ||| | || | |||||| |||||||| | || |||| | |||| Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 177824 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| ||| ||||| | ||||| | || |||| ||||| | |||| Sbjct 177825 CCTTCGTAGGTCTTGTAA--GGACCAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGAG 177882 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | || || ||||| ||||| |||||||| | | ||||| || |||| Sbjct 177883 CAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGA 177942 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || | ||| || | || ||||| || || || || | |||| |||||||| | Sbjct 177943 AAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGTC 178002 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 | || | |||||| | ||| |||| ||| || | || ||||| || | Sbjct 178003 GGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGATCT 178062 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA- 145594 | |||||||| || || || | ||| | | | | ||| | ||||||||| | Sbjct 178063 TGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACAC 178122 Query 145595 --GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 |||| || |||| | | | | | ||| | || ||||| || ||||| || Sbjct 178123 CGGCCTTGTAGTCGACAAAAGA---AGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCGA 178179 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| || | | |||| | || ||||| | |||||| ||| | |||||| | Sbjct 178180 CCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTAC 178239 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 | || || | ||| || || || | |||||| ||||||||||| ||||| | || | Sbjct 178240 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTAC 178299 Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCT--GCGCACGCACCTGCTG 145830 ||||||| ||||| ||| | || || ||| | | | || || || || Sbjct 178300 CAGTCTCGGTCTGCGCCTCAAGAATGG--CGTACCAAAGCTTTTGTGCGCGAACAGTCTC 178357 Query 145831 CTGGTAGCGGCCCTC-TTCT-----TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 |||||||| |||| ||||| || ||| || |||| || | ||| Sbjct 178358 ------GCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACC 178411 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||| ||||| ||||| || |||| ||| || ||||| || | ||| ||||||| | Sbjct 178412 GTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTC 178471 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004 | ||| |||| ||| || | || || | |||||| ||||| | | ||||| || Sbjct 178472 TTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCG 178531 Query 146005 GCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063 | ||||| || ||| | || || | ||| | | | ||| ||| ||||||| Sbjct 178532 GACCTCCTCCTTGCCGTGGTTCTTGCG-CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 178590 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGAC 146120 | || || | |||| ||||| ||| ||| || ||| ||||||||||| || | | Sbjct 178591 ATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACATAGC 178650 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT-- 146178 | | ||||||| | || || | |||||| || ||| | | | ||||| || Sbjct 178651 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGC 178710 Query 146179 -AGAGTT-TATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 | | | ||| | ||| | || | || || || || | ||| | |||||| Sbjct 178711 CACCGATGTAT----GAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCA 178766 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 || |||||| || || ||| ||| || ||||| |||||||| ||||| || Sbjct 178767 GCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCC 178826 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354 |||| ||| ||| || ||||| || |||| || | || || ||||| || Sbjct 178827 TCCTTC--ATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGA 178884 Query 146355 ACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATC-ATCCGATACGTTTCGATA 146413 |||||||||| ||||| || || ||| | ||| | || || || ||||| Sbjct 178885 ACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCG-TAGGTCTCGATG 178943 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | | |||||| || || |||||||| | ||| || ||||||||||||||||| || Sbjct 178944 GCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGG 179003 Query 146474 CGCTCCGCCAC 146484 ||||| || || Sbjct 179004 CGCTCGGCGAC 179014 >seq4 Length=2069545 Score = 150 bits (166), Expect = 2e-31 Identities = 350/518 (68%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | |||||||| |||||||||| || |||||| | || | | | Sbjct 1053486 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC 1053427 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || |||||| | || | || || || || ||| ||||| |||| || || | Sbjct 1053426 ACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCT 1053367 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || ||| ||||||| | |||| || | || | | |||||||| || || || ||| Sbjct 1053366 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCCGGTCTAACATTCTCCAA 1053308 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG---TCTCTACTATAA 46319 |||||| || || || ||||||||| |||| || ||||| || || ||||| || | Sbjct 1053307 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCT 1053248 Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC-ATGTTCAAGGAGGCGG 46378 | |||| | || | | ||| || || | || | |||| || ||| || || | Sbjct 1053247 C-CTCGAGAACAAGCCCAGC-----CCAGAGTCTGT-CAGAGCTATCATCACTGAAGCCG 1053195 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG 46438 | | |||||| ||||||| || | | |||||| || || ||||| |||||||||| Sbjct 1053194 TCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACG 1053135 Query 46439 C-ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 | || ||| ||||| | ||||||||||| || || ||||| ||||| || || | Sbjct 1053134 CTACTCTCA-TGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGC 1053076 Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 | ||| | ||||| ||| || || || || ||| | ||||| || |||| Sbjct 1053075 AACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCT 1053016 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || || ||||| |||||||||||||| || Sbjct 1053015 GGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1052978 >seq1 Length=2771824 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | || |||||||| || |||||||| || Sbjct 1871287 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 1871346 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| | || | |||||||||||| |||||| Sbjct 1871347 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 1871406 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || ||| | ||||||| Sbjct 1871407 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACT 1871466 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| ||||| || || || |||||||| Sbjct 1871467 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || | || | || ||||||||||| |||||||| ||| Sbjct 1871515 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1871574 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | |||||| || ||| |||| | |||||| ||||||||||| Sbjct 1871575 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 1871634 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | ||| ||| | || || | Sbjct 1871635 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 1871694 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || ||||| || ||||| Sbjct 1871695 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| || ||||| || |||||||| ||| | Sbjct 1872024 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 1872083 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 1872084 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 1872143 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||| || | ||||| | Sbjct 1872144 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 1872203 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 1872204 TCGAGGGTGATGGTCTTTCCGGT 1872226 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || | || | || |||||||| ||||||||||| ||| | Sbjct 1871743 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1871802 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| || ||||| || ||| |||| | || ||||| ||||||||| Sbjct 1871803 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 1871862 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1871863 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 1871922 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | || | ||| || ||||| Sbjct 1871923 TCAAGAGTGATGGTCTTGCCGGT 1871945 >seq3 Length=2234992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| || |||||||| || Sbjct 1534098 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1534157 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| || Sbjct 1534158 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 1534217 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 1534218 ATGCCCTCCTTGTC 1534231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011879575040