Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq80 140 2e-28 seq2 109 4e-19 >seq80 Length=8840 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7503 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7444 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7443 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7409 >seq2 Length=2716540 Score = 109 bits (120), Expect = 4e-19 Identities = 207/302 (69%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| | |||||||||||||| ||| ||||||| ||||| |||| || | Sbjct 1643524 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGATCGAAGGCA 1643465 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| ||||| || || ||||||||||||||| || || ||| || | |||| | Sbjct 1643464 AGGGCAACGGCATCAAGACCGTCATTGTCAACCTGAGCAGCGTGGCTCAGTCTCTCGCCC 1643405 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 |||| | | || | || || || || | |||||| || |||||||| || | Sbjct 1643404 GCCCCCCTGCTCACGTCATCAAGTACTTTGGTTTCGAACTCGGAGCTCAGAC-CAACACG 1643346 Query 6367 A-TCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425 | | ||| | || || | ||| | ||||| | ||| || | |||||| |||||| Sbjct 1643345 AGCCCCAACGATGACCGTTGGATCATCAACGGTGCCCATGACGCCAGCAAGCTCCAGGAC 1643286 Query 6426 TTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 | ||||| ||||| || ||||| || || || | | ||| | ||||| |||||| Sbjct 1643285 TACCTTGATGGCTTCATCTCAAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACC 1643226 Query 6486 GA 6487 || Sbjct 1643225 GA 1643224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946563181636