Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq80 140 2e-28
seq2 109 4e-19
>seq80
Length=8840
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 7503 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7444
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 7443 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7409
>seq2
Length=2716540
Score = 109 bits (120), Expect = 4e-19
Identities = 207/302 (69%), Gaps = 2/302 (1%)
Strand=Plus/Minus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246
|||| | ||| | |||||||||||||| ||| ||||||| ||||| |||| || |
Sbjct 1643524 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGATCGAAGGCA 1643465
Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306
|||| ||||| || || ||||||||||||||| || || ||| || | |||| |
Sbjct 1643464 AGGGCAACGGCATCAAGACCGTCATTGTCAACCTGAGCAGCGTGGCTCAGTCTCTCGCCC 1643405
Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366
|||| | | || | || || || || | |||||| || |||||||| || |
Sbjct 1643404 GCCCCCCTGCTCACGTCATCAAGTACTTTGGTTTCGAACTCGGAGCTCAGAC-CAACACG 1643346
Query 6367 A-TCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425
| | ||| | || || | ||| | ||||| | ||| || | |||||| ||||||
Sbjct 1643345 AGCCCCAACGATGACCGTTGGATCATCAACGGTGCCCATGACGCCAGCAAGCTCCAGGAC 1643286
Query 6426 TTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485
| ||||| ||||| || ||||| || || || | | ||| | ||||| ||||||
Sbjct 1643285 TACCTTGATGGCTTCATCTCAAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACC 1643226
Query 6486 GA 6487
||
Sbjct 1643225 GA 1643224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946563181636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |