Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 >seq15 Length=714589 Score = 140 bits (154), Expect = 4e-28 Identities = 470/720 (65%), Gaps = 14/720 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| || || || | |||| | | || ||||| || || | ||| ||||| | | | Sbjct 178398 TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTC 178457 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || | |||| || | || || ||||| ||||| ||||||||||| || || || Sbjct 178458 CAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAG 178517 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | | | ||||| || || ||||| || || ||||| |||| | Sbjct 178518 AGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAAA 178576 Query 63173 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | |||| ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 178577 GACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || || Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63349 ||| || || || || ||| || ||| | |||||||| | | ||| || Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 178754 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || || | || ||||| || || || || | || || || ||||| Sbjct 178755 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 178814 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAG 63467 || || || || ||| |||||| | || || || |||||| |||||| | | Sbjct 178815 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GTG 178872 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTG 63526 | ||||| || || || || || || ||||| || || | |||| ||| | |||| | | Sbjct 178873 TGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCG 178931 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || ||||| || || || || || || | ||||| || || || |||||||| | Sbjct 178932 TAGGTCTCGATGGCCTTCTCAATGTCATCACCG-TGAATGCCAACAGCAACACGCATGAG 178990 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || | || ||| |||| |||||| | | || || || | Sbjct 178991 CATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAG 179050 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || |||||||| | | ||| ||||| || ||||| | ||| |||||||||| Sbjct 179051 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAG 179110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630764417600