Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 194 2e-44 >seq4 Length=2069545 Score = 194 bits (214), Expect = 2e-44 Identities = 485/726 (67%), Gaps = 17/726 (2%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| || || || ||||| || |||| | | | ||||| || || ||| | || Sbjct 1053098 TCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAGA-GCGCA 1053156 Query 92987 -GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||||| |||||| ||||||| || | ||| || | |||||||| | | ||| || | Sbjct 1053157 TGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATAGCTCT 1053216 Query 93046 TACTCTACTATTTGGTGG--TTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 || ||| | | ||| || || | ||| | | | | | ||| || |||||| Sbjct 1053217 GACAG-ACTCTGGGCTGGGCTTGTTCT-CGAGGAGAGAGAAGAGAAGGCAGGCGAAGTCG 1053274 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || | || ||||| || || || | ||| ||| |||||||| ||| || | ||| Sbjct 1053275 GTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGA 1053334 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || || ||||||||||| || || || || ||| ||| || || ||||| || || Sbjct 1053335 CCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACA 1053394 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT---GCTGATCCATTTT 93280 || || ||||| || | || | ||| || || ||| || | | ||||||| Sbjct 1053395 GCGGCGAATGCAACGAGGCGGTTGGCGAA---TGTGGAGTTCTTGTCGGAGATCCATCGC 1053451 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTTAAATAGGTA 93339 | ||||| ||||| || || || || || | |||| ||||| ||||| || ||||| Sbjct 1053452 AGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGA-TGTTGTCGATGGCGTTGAAGAGGTA 1053510 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 |||| | | || | |||||||| ||||| | |||||| || | || || || Sbjct 1053511 CCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTCTGAGTG 1053570 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| |||||||| |||||||| |||| || || | ||| || ||||| Sbjct 1053571 AACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGTACTTC 1053630 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||| |||| ||| || || || || ||||| || |||||||| ||||| || || || Sbjct 1053631 GCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAGAAGGC 1053690 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAATCGGATAG 93576 | | || || || ||| ||||| || | |||| | ||| ||| || Sbjct 1053691 GAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTCCAGTCGTGAAG 1053750 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || || || || |||| || || | ||||| || || || || || || |||||||| Sbjct 1053751 GTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 1053810 Query 93637 ATCCCA 93642 | ||| Sbjct 1053811 CTGCCA 1053816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859714121440