Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq5 111 3e-19
seq6 87.8 4e-12
seq1 84.2 4e-11
>seq5
Length=1748254
Score = 111 bits (122), Expect = 3e-19
Identities = 173/245 (71%), Gaps = 13/245 (5%)
Strand=Plus/Plus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| || |||||||| ||||| |||||||||||||| || | | || || || || |
Sbjct 1010442 AGTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGCTCGCTTTGGCGCGTGCTATGCTTAT 1010501
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||| ||||| || || || || || || || ||||||||| |||| ||||||| ||
Sbjct 1010502 GCGCGCCGACGTGCTTCTTCTCGACGAACCCACCAACCACTTGGATGTTGCCAACGTTGC 1010561
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA-----AGAATGTTTCTTCCCTCATTGTCTCT 279869
|||||| | ||||| | ||||| | ||| || || | | || ||||||
Sbjct 1010562 CTGGCTCGGAAAGTACCT--CAAGTCTCACACCGAGA---TTACTAGCTTGATCGTCTCT 1010616
Query 279870 CACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTG 279929
|||||||| || ||||| || | || ||| | | |||| ||||| |||||||| |
Sbjct 1010617 CACGACTCCGGTTTCCTTGACGAGGTCTGCACAGACATCTACCACTACGAGCAAAA---G 1010673
Query 279930 AAGCT 279934
|||||
Sbjct 1010674 AAGCT 1010678
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235
||||| |||| ||||| ||||| ||||| || || || | || |||||||||| | |
Sbjct 1010923 ATTGGCGCCAACGGTGCTGGTAAATCTACTCTCATTAAGATGCTTACTGGCGAGA-CTAT 1010981
Query 280236 GCCAC-TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294
|| | ||||| |||| |||||| |||||| |||| || | |||| || |||||
Sbjct 1010982 TCCTCAAGAGGGTACCGTCGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCA 1011041
Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354
|||| || | ||| |||||| ||| |||| | ||| || ||||| || | || |||||
Sbjct 1011042 CGCTCTCGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTATCTCCAATGGCG 1011101
Query 280355 CTATGC 280360
|| ||
Sbjct 1011102 ATACGC 1011107
>seq6
Length=1662277
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437
|| || |||| ||||||||||| ||| |||| ||| |||||||||| | ||
Sbjct 1123135 GCCTACGGTGCTAAGATTCTGCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGT 1123076
Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497
|| |||||| |||| ||||| || | || |||| ||| || |||||||| || |||
Sbjct 1123075 TACGGTCTCCTCGGACCCAACGGTTCCGGAAAGACCACCCTCATGCGCGCTATCAACAAC 1123016
Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557
| ||| | || || || || || | ||||| | ||| || || || |||||||||
Sbjct 1123015 GAGCAGGTCGAGGGTTTCCCCAAGCAAAACGAGGTCAAGACCGTCTACGTCGAGCACGAC 1122956
Query 279558 ATCGACTC 279565
| |||||
Sbjct 1122955 TTGGACTC 1122948
>seq1
Length=2771824
Score = 84.2 bits (92), Expect = 4e-11
Identities = 226/342 (66%), Gaps = 14/342 (4%)
Strand=Plus/Minus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|||||| | ||||||| ||||| |||||||| | |||| | ||| || ||||||
Sbjct 2352487 GACTTCGTAAACAAGGAACTCATCCTTTTCTCAATGGCTGATAACGTGCGATCGATTCCC 2352428
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
||| || ||||| || ||||| ||||| ||| | || | | || |||| |||
Sbjct 2352427 TCCGTTGTCGATGGTCTGAAGCCCGGTCAGCGAAAGGTTCTGTATACCTGTTTCAGGCGA 2352368
Query 218638 AACCTGGTTCAAGAAA----TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693
||| | ||||||| | ||||||| | || || | |||| || || | | |
Sbjct 2352367 AACAT----CAAGAAAGATGTCAAGGTCGTTGAGCTTGCAGGTTCCGTCTCTGGATCCAC 2352312
Query 218694 TGGCTACCATCACGGTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751
| ||| ||||||||| || ||| ||| || | ||||| | | || ||| ||
Sbjct 2352311 CGACTATGCTCACGGTGA--AGCTTCTATGCAAGGAACTATTGTCAACCTTGCGCAGAAC 2352254
Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811
| ||| || | |||||||| |||| || |||| ||| | || ||||| |||||
Sbjct 2352253 TTTGTCGGTACCAACAACATCAACTACCTTGAGCCCAGTGGTAACTTCGGTTCGCGTCTC 2352194
Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACA 218853
|||||| ||| ||| |||||||||| ||||||
Sbjct 2352193 AAGGGTGGTGCCGATGCTGCCAGCGCCAGGTATA--TTTACA 2352154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834745611196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |