Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 111 3e-19 seq6 87.8 4e-12 seq1 84.2 4e-11 >seq5 Length=1748254 Score = 111 bits (122), Expect = 3e-19 Identities = 173/245 (71%), Gaps = 13/245 (5%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| ||||| |||||||||||||| || | | || || || || | Sbjct 1010442 AGTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGCTCGCTTTGGCGCGTGCTATGCTTAT 1010501 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||| ||||| || || || || || || || ||||||||| |||| ||||||| || Sbjct 1010502 GCGCGCCGACGTGCTTCTTCTCGACGAACCCACCAACCACTTGGATGTTGCCAACGTTGC 1010561 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA-----AGAATGTTTCTTCCCTCATTGTCTCT 279869 |||||| | ||||| | ||||| | ||| || || | | || |||||| Sbjct 1010562 CTGGCTCGGAAAGTACCT--CAAGTCTCACACCGAGA---TTACTAGCTTGATCGTCTCT 1010616 Query 279870 CACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTG 279929 |||||||| || ||||| || | || ||| | | |||| ||||| |||||||| | Sbjct 1010617 CACGACTCCGGTTTCCTTGACGAGGTCTGCACAGACATCTACCACTACGAGCAAAA---G 1010673 Query 279930 AAGCT 279934 ||||| Sbjct 1010674 AAGCT 1010678 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 ||||| |||| ||||| ||||| ||||| || || || | || |||||||||| | | Sbjct 1010923 ATTGGCGCCAACGGTGCTGGTAAATCTACTCTCATTAAGATGCTTACTGGCGAGA-CTAT 1010981 Query 280236 GCCAC-TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 || | ||||| |||| |||||| |||||| |||| || | |||| || ||||| Sbjct 1010982 TCCTCAAGAGGGTACCGTCGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCA 1011041 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||| || | ||| |||||| ||| |||| | ||| || ||||| || | || ||||| Sbjct 1011042 CGCTCTCGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTATCTCCAATGGCG 1011101 Query 280355 CTATGC 280360 || || Sbjct 1011102 ATACGC 1011107 >seq6 Length=1662277 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || || |||| ||||||||||| ||| |||| ||| |||||||||| | || Sbjct 1123135 GCCTACGGTGCTAAGATTCTGCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGT 1123076 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 || |||||| |||| ||||| || | || |||| ||| || |||||||| || ||| Sbjct 1123075 TACGGTCTCCTCGGACCCAACGGTTCCGGAAAGACCACCCTCATGCGCGCTATCAACAAC 1123016 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 | ||| | || || || || || | ||||| | ||| || || || ||||||||| Sbjct 1123015 GAGCAGGTCGAGGGTTTCCCCAAGCAAAACGAGGTCAAGACCGTCTACGTCGAGCACGAC 1122956 Query 279558 ATCGACTC 279565 | ||||| Sbjct 1122955 TTGGACTC 1122948 >seq1 Length=2771824 Score = 84.2 bits (92), Expect = 4e-11 Identities = 226/342 (66%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||| | ||||||| ||||| |||||||| | |||| | ||| || |||||| Sbjct 2352487 GACTTCGTAAACAAGGAACTCATCCTTTTCTCAATGGCTGATAACGTGCGATCGATTCCC 2352428 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 ||| || ||||| || ||||| ||||| ||| | || | | || |||| ||| Sbjct 2352427 TCCGTTGTCGATGGTCTGAAGCCCGGTCAGCGAAAGGTTCTGTATACCTGTTTCAGGCGA 2352368 Query 218638 AACCTGGTTCAAGAAA----TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| | ||||||| | ||||||| | || || | |||| || || | | | Sbjct 2352367 AACAT----CAAGAAAGATGTCAAGGTCGTTGAGCTTGCAGGTTCCGTCTCTGGATCCAC 2352312 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751 | ||| ||||||||| || ||| ||| || | ||||| | | || ||| || Sbjct 2352311 CGACTATGCTCACGGTGA--AGCTTCTATGCAAGGAACTATTGTCAACCTTGCGCAGAAC 2352254 Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811 | ||| || | |||||||| |||| || |||| ||| | || ||||| ||||| Sbjct 2352253 TTTGTCGGTACCAACAACATCAACTACCTTGAGCCCAGTGGTAACTTCGGTTCGCGTCTC 2352194 Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACA 218853 |||||| ||| ||| |||||||||| |||||| Sbjct 2352193 AAGGGTGGTGCCGATGCTGCCAGCGCCAGGTATA--TTTACA 2352154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834745611196