Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 205 2e-47 seq1 188 1e-42 >seq4 Length=2069545 Score = 205 bits (226), Expect = 2e-47 Identities = 575/867 (66%), Gaps = 27/867 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| ||| || | Sbjct 1052959 CATGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGC 1053018 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || |||||| |||||||||||| |||||||| |||| | |||| || || Sbjct 1053019 CAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCC 1053078 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||||| |||||||||||||| |||| ||| || | ||| Sbjct 1053079 GAGGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTT 1053138 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || ||| || | ||||||| | ||| |||| || | |||| || Sbjct 1053139 CATGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGC 1053198 Query 10175 TTCCTCGACGAT-GCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233 ||| || ||| |||| | || || || ||||||||||||| || | | Sbjct 1053199 TTCAGTGATGATAGCTC-TGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGAAGA 1053257 Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 | || | || | ||| | ||||||||| ||| ||||| ||||||||| || Sbjct 1053258 GAAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATG 1053317 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 ||||||||||| || || || || |||||||| |||| | ||| || ||| || Sbjct 1053318 TTAGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGA 1053377 Query 10354 ACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGAGCGGTCGC 10410 | | | |||||| || | | || |||||||| | ||||| |||| | | Sbjct 1053378 AGAAGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGT 1053437 Query 10411 GCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAG 10470 || | || | |||||| | |||||||| | | | ||||| | ||||| | Sbjct 1053438 CGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGG 1053497 Query 10471 CCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527 | | |||||| | || ||| || |||| || ||| | || | |||||| | Sbjct 1053498 CGTTGAAGAGGTACCTGCGCTGCTTGGGCTCG--CT-AATGTATGTGTCGATGAGCAGAG 1053554 Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC 10586 |||| ||| ||| ||| |||| | ||| || ||||||| ||| |||||| Sbjct 1053555 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCAT-CGTGCC 1053613 Query 10587 GAGGGG-TCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCCA 10643 |||| | || ||||| || | | | | | | | |||||||| | || |||||| Sbjct 1053614 TCGGGGATTTGT-ACTTCGCTAG--AGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 1053670 Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG- 10702 ||| | |||| |||||| |||||| ||| ||||||| |||||| |||||||| || Sbjct 1053671 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 1053730 Query 10703 ---TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 || || |||||| | |||| | ||| | || |||||| |||||||||| Sbjct 1053731 CGCTTGTT----CCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAA 1053786 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTG 10786 || || ||||||||||||||||||| Sbjct 1053787 AGAAGCCTCGGCCTTCTTGTACATCTG 1053813 >seq1 Length=2771824 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || |||||||| ||||||||||| || |||||| Sbjct 1871515 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1871574 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| |||||||| ||||| | |||||||| || ||| Sbjct 1871575 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 1871634 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| | ||||||| || || ||||| |||||| || Sbjct 1871635 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 1871694 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||||||||| || ||||| Sbjct 1871695 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || |||||||| || || ||||| || ||||| Sbjct 1871743 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1871802 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | ||| || || || || Sbjct 1871803 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 1871862 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||||| ||||||| ||||||||||| | ||| || || Sbjct 1871863 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 1871922 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 1871923 TCAAGAGTGATGGTCTTGCCGGT 1871945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620602836320