Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 333 5e-86 seq15 262 7e-65 >seq4 Length=2069545 Score = 333 bits (368), Expect = 5e-86 Identities = 599/861 (70%), Gaps = 32/861 (4%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 1053818 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCT 1053759 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||| | | |||| | || |||| || ||| || Sbjct 1053758 CCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGCTTCTTCATCTCC 1053700 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| ||||| || ||||| ||||| |||||||| | | Sbjct 1053699 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGA 1053640 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| | || || || | ||||| || ||||||||||| ||||| || || Sbjct 1053639 TTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 1053580 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||||| ||||| ||| ||| | ||||||| |||| ||||| || ||| Sbjct 1053579 GAGAACGTTCACTCAGAGACCTACTCT---CTGCTCATCGACACATACATTAGCGAGCCC 1053523 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 |||| | || ||||| ||||| || | || ||||||||| |||||||| Sbjct 1053522 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 1053463 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| || |||||| | | || | | || |||| | | | || || || Sbjct 1053462 GACTGGGCCCTGCGATGGATCTCC-GACAAGAACTCCACATTCGCCAACCGCCTCGTTGC 1053404 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || |||| || ||||| ||||||||| || | ||||||||||||||||||||||| Sbjct 1053403 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 1053344 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| | ||||||||| || || ||||| ||||| |||||| | | ||||||| Sbjct 1053343 GAAGCGCGGTCT-GATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 1053285 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | |||| | ||||| |||||||| || ||||| | |||| | |||||||| Sbjct 1053284 GCATGCACACCGACTTCGCCTGCCTTCTCTTCTC---TCTCCTCGAGAACAAGCCCAGCC 1053228 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||| ||| | || |||||||| || ||||| ||||| ||| |||||||| | | Sbjct 1053227 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 1053168 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAG 43010 | | || || | ||| |||||||||| | | || ||||||||| | |||||| || Sbjct 1053167 ACGCACTACCATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAG 1053109 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACG 43064 | |||||| |||| ||| |||| ||| ||| || || | ||||| || | Sbjct 1053108 TTCGTCGCTGACCGTCTGCTGT------TGGCCCTCGGCAACGTCAAGGTCTACCACGCC 1053055 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||||||||| ||||||||||| || ||| || ||||||||||| |||||| Sbjct 1053054 ACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAG 1052995 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 |||||||||| |||||||||| Sbjct 1052994 AAGCGCGTCGGCGACTACCAG 1052974 >seq15 Length=714589 Score = 262 bits (290), Expect = 7e-65 Identities = 519/761 (68%), Gaps = 18/761 (2%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| ||||| ||||| || | ||||||| |||||||| ||||| | | Sbjct 178161 GCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAG 178220 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| || |||| || || ||| |||| |||||| ||||||||| Sbjct 178221 TTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 178280 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||| ||||| || |||||| ||| || | || | | || ||| || | Sbjct 178281 TAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTT 178340 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCT 244925 || || ||| ||| ||||| ||||| |||||||| ||||||||||| Sbjct 178341 TGTGCGCGAACAGTCTCGCGGCCCTTGT--TCTGCTTCTCGTAGCTCTCGTACAGGGCCT 178398 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 |||| || || |||| ||| | ||||| |||||| |||||||||||| ||| Sbjct 178399 CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCC 178458 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | | |||| ||| | ||| | || |||||||||||| || ||||| ||||| | ||||| Sbjct 178459 AGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGA 178518 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | ||| ||| ||| |||||| | ||| || | ||| |||||| Sbjct 178519 GATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGA 178578 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| ||||||| ||||| | ||||| |||| ||| || || ||||||||||| |||| Sbjct 178579 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCT 178638 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||| | | || || | || | | |||||| Sbjct 178639 GGTCGA----CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTA 178694 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGAC 245278 || ||||| ||||| |||||| | ||| | || | || || ||| | | Sbjct 178695 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG-TGC--ACGTTG 178751 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | ||||| ||| ||||||||| | || ||| |||||| ||||| ||| Sbjct 178752 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 178811 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || ||||||||| |||||||| || || ||||| || |||| || || || Sbjct 178812 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 178871 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||| || |||||||| || || |||||| || ||||| Sbjct 178872 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 178912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337358538560