Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4 333 5e-86
seq15 262 7e-65
>seq4
Length=2069545
Score = 333 bits (368), Expect = 5e-86
Identities = 599/861 (70%), Gaps = 32/861 (4%)
Strand=Plus/Minus
Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360
||||| |||||||||||||| || || ||||||||| |||||||| |||||
Sbjct 1053818 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCT 1053759
Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416
|||||||| || |||| | | |||| | || |||| || ||| ||
Sbjct 1053758 CCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGCTTCTTCATCTCC 1053700
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|| | || ||||||||||| ||||| || ||||| ||||| |||||||| | |
Sbjct 1053699 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGA 1053640
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
||| | || || || | ||||| || ||||||||||| ||||| || ||
Sbjct 1053639 TTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 1053580
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593
|||||||| ||||| ||| ||| | ||||||| |||| ||||| || |||
Sbjct 1053579 GAGAACGTTCACTCAGAGACCTACTCT---CTGCTCATCGACACATACATTAGCGAGCCC 1053523
Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653
|||| | || ||||| ||||| || | || ||||||||| ||||||||
Sbjct 1053522 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 1053463
Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712
|||||||| || |||||| | | || | | || |||| | | | || || ||
Sbjct 1053462 GACTGGGCCCTGCGATGGATCTCC-GACAAGAACTCCACATTCGCCAACCGCCTCGTTGC 1053404
Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772
|| |||| || ||||| ||||||||| || | |||||||||||||||||||||||
Sbjct 1053403 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 1053344
Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831
| || ||| | ||||||||| || || ||||| ||||| |||||| | | |||||||
Sbjct 1053343 GAAGCGCGGTCT-GATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 1053285
Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891
| |||| | ||||| |||||||| || ||||| | |||| | ||||||||
Sbjct 1053284 GCATGCACACCGACTTCGCCTGCCTTCTCTTCTC---TCTCCTCGAGAACAAGCCCAGCC 1053228
Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951
||| ||| | || |||||||| || ||||| ||||| ||| |||||||| | |
Sbjct 1053227 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 1053168
Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAG 43010
| | || || | ||| |||||||||| | | || ||||||||| | |||||| ||
Sbjct 1053167 ACGCACTACCATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAG 1053109
Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACG 43064
| |||||| |||| ||| |||| ||| ||| || || | ||||| || |
Sbjct 1053108 TTCGTCGCTGACCGTCTGCTGT------TGGCCCTCGGCAACGTCAAGGTCTACCACGCC 1053055
Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124
| |||||||||||| ||||||||||| || ||| || ||||||||||| ||||||
Sbjct 1053054 ACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAG 1052995
Query 43125 AAGCGCGTCGCCGACTACCAG 43145
|||||||||| ||||||||||
Sbjct 1052994 AAGCGCGTCGGCGACTACCAG 1052974
>seq15
Length=714589
Score = 262 bits (290), Expect = 7e-65
Identities = 519/761 (68%), Gaps = 18/761 (2%)
Strand=Plus/Plus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|||| |||||| ||||| ||||| || | ||||||| |||||||| ||||| | |
Sbjct 178161 GCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAG 178220
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|| || |||||| || |||| || || ||| |||| |||||| |||||||||
Sbjct 178221 TTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 178280
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
|| ||||| ||||| || |||||| ||| || | || | | || ||| || |
Sbjct 178281 TAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTT 178340
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCT 244925
|| || ||| ||| ||||| ||||| |||||||| |||||||||||
Sbjct 178341 TGTGCGCGAACAGTCTCGCGGCCCTTGT--TCTGCTTCTCGTAGCTCTCGTACAGGGCCT 178398
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
|||| || || |||| ||| | ||||| |||||| |||||||||||| |||
Sbjct 178399 CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCC 178458
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| | |||| ||| | ||| | || |||||||||||| || ||||| ||||| | |||||
Sbjct 178459 AGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGA 178518
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | | | ||| ||| ||| |||||| | ||| || | ||| ||||||
Sbjct 178519 GATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGA 178578
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
|||| ||||||| ||||| | ||||| |||| ||| || || ||||||||||| ||||
Sbjct 178579 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCT 178638
Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221
|||| | | | ||||| |||| | | || || | || | | ||||||
Sbjct 178639 GGTCGA----CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTA 178694
Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGAC 245278
|| ||||| ||||| |||||| | ||| | || | || || ||| | |
Sbjct 178695 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG-TGC--ACGTTG 178751
Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338
| ||| | ||||| ||| ||||||||| | || ||| |||||| ||||| |||
Sbjct 178752 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 178811
Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
|| || ||||||||| |||||||| || || ||||| || |||| || || ||
Sbjct 178812 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 178871
Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
||| || |||||||| || || |||||| || |||||
Sbjct 178872 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 178912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944337358538560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |