Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-23 >seq4 Length=2069545 Score = 123 bits (136), Expect = 5e-23 Identities = 293/438 (67%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 ||||| ||||| | || ||| |||| | ||||||| ||||| ||| ||| Sbjct 1053393 GTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 1053334 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 ||||||| || || | || |||||| ||||| || ||||||||| | ||| Sbjct 1053333 CTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACC 1053274 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAA--CGGTCA 243496 | |||| ||| | | || ||| ||||||||| ||| | | | | |||| Sbjct 1053273 GACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAGCCCAGAGTCTGTCA 1053216 Query 243497 AACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCAT 243556 | |||||||| ||||| || || | || |||| ||| | ||||||| | |||| Sbjct 1053215 GAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCAT 1053156 Query 243557 GCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACC 243616 || || | ||||||||| || |||||| | || |||||||| ||||| || |||| Sbjct 1053155 GCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACC 1053096 Query 243617 GCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTA 243676 | | | | || || || | | || || ||| || ||| |||||||| | ||| | Sbjct 1053095 GTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCA 1053036 Query 243677 TGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATC 243736 ||||| |||||| || || || || ||||||||||| ||||| ||| | || || | Sbjct 1053035 TGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACC 1052976 Query 243737 A-ACGCCCTGGTGTGATG 243753 | | | || ||||| ||| Sbjct 1052975 AGAAGGCC-GGTGTCATG 1052959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877795618600