Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq15 260 2e-64 seq4 93.3 5e-14 >seq15 Length=714589 Score = 260 bits (288), Expect = 2e-64 Identities = 922/1428 (65%), Gaps = 23/1428 (2%) Strand=Plus/Plus Query 113903 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 113962 |||||||| |||||||| |||||| || | |||||| |||| ||||||||| Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644 Query 113963 TCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATG 114022 || |||||||| ||||| |||| || || | |||||||| || ||||||||||| ||| Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704 Query 114023 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 114082 || || ||| || | ||| | || ||| ||||| || | ||||||| || Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764 Query 114083 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGAT 114142 | | | | | | ||||||||| ||||||||||||| ||||| | || ||| Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 177824 Query 114143 CCCTCAAATGTCTCGTATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGG 114199 || || | |||| ||| || || || |||| || | ||| | | ||| Sbjct 177825 CCTTCGTAGGTCTTGTAAGGACC---AAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGA 177881 Query 114200 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 114259 || || || || || |||||||| || | || | ||| || ||||| || || Sbjct 177882 GCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCG 177941 Query 114260 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 114319 || | || ||| | || |||| || |||||||| ||||| | || || || Sbjct 177942 AAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGT 178001 Query 114320 CGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACC 114379 || || | | || || || || || || || || ||||| | | Sbjct 178002 CGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGATC 178061 Query 114380 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACT 114438 | || | || ||||||||| | ||||| ||| || ||||| | | | ||||| || Sbjct 178062 TTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACA 178121 Query 114439 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 114498 || | || | | |||| | ||| ||||| | || |||| || || || | | Sbjct 178122 CCG-GCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCGAC 178180 Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||| | |||||||||| | ||| || || ||||| || || || ||||| || Sbjct 178181 CTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTACC 178240 Query 114559 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 114618 | |||||| || || ||| ||| || || |||||||||||||| | || | || Sbjct 178241 GAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACC 178300 Query 114619 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTT 114678 ||||| || || | || ||||| || | ||| | | || | ||||| || Sbjct 178301 AGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCGCG 178360 Query 114679 GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC 114738 | | || || |||||| | ||| ||||| || || |||||||| | | || Sbjct 178361 GCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATC 178420 Query 114739 TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACG 114798 | ||| || || || | ||||| | ||| | ||| | || || | ||||| Sbjct 178421 GGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACG 178480 Query 114799 CTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTC 114858 ||||||||||||||| || ||||| || || |||||||||| ||| ||| | || || Sbjct 178481 CTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTC 178540 Query 114859 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 114918 | || || || |||| || | ||| | | || || |||||||| || || || Sbjct 178541 CTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAG 178600 Query 114919 GTACACCGCGATTGACCC------CTTACGACGACCAGCCTGGTTTACATACCTCGCTGT 114972 ||| | |||| | || ||| | | ||| |||||| ||||| | || || Sbjct 178601 GTAGATGGCGAAGGCACCTGGGCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGT 178657 Query 114973 GGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC-CCGAA 115031 | || |||| || ||||| ||||||| ||| | |||| || || || || |||| Sbjct 178658 GTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGAT 178717 Query 115032 -TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTT 115090 || ||| | | | || | | || | || | |||||||| || || ||| Sbjct 178718 GTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTG 178775 Query 115091 GAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTT 115150 ||||| ||| || | |||| || |||| || |||||||| ||| |||| | Sbjct 178776 GAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATG 178835 Query 115151 GCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGT 115210 |||| |||||||| |||||||||||| |||||| || |||||||| | || || Sbjct 178836 TCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGC 178895 Query 115211 GTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAAT 115269 | ||||| |||| ||| ||| ||||| | ||||||||||| | | | ||| Sbjct 178896 GAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAAT 178954 Query 115270 GTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||| || |||||||| || | | || ||||| | ||||| ||| || Sbjct 178955 GTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002 >seq4 Length=2069545 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||||||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 1053284 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 1053343 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || ||||| ||||||||| ||||| ||| ||||| Sbjct 1053344 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 1053403 Query 126185 GCAAAGAGACG 126195 |||| ||| || Sbjct 1053404 GCAACGAGGCG 1053414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352435160480