Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
>seq1
Length=2771824
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| |||| || || || ||||||| |||||||| ||
Sbjct 1871317 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCA 1871376
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| ||||||| ||||||||||| ||||| || || || || || || || || ||||
Sbjct 1871377 GCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTT 1871436
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | || || | | || ||||| | || | |||||| ||||| | |||
Sbjct 1871437 ACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTC 1871496
Query 64427 TTTACGAAAATTTGCAT 64443
|| || || || |||||
Sbjct 1871497 TTGACAAAGATCTGCAT 1871513
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||||| | || || || || | || || || || ||||||||||| || |
Sbjct 1871742 ACCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGA 1871801
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| || || ||||| ||||| | || || || ||||| || |||||
Sbjct 1871802 CAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGG 1871861
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| || ||| ||| || || | || || | || ||
Sbjct 1871862 GATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAAC 1871921
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421
|| | ||| | ||||||||||||||
Sbjct 1871922 CTCAAGAGTGATGGTCTTGCCGGTCA 1871947
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || ||||| || || |||||||| || | | |||||| | ||
Sbjct 1872039 AGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCC 1872098
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| | || | ||||||||||| || ||||| || || || ||
Sbjct 1872099 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 1872158
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 1872159 TGGATCTT 1872166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499643825692640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |