Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq15 253 2e-62
>seq15
Length=714589
Score = 253 bits (280), Expect = 2e-62
Identities = 608/917 (66%), Gaps = 2/917 (0%)
Strand=Plus/Minus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | | ||||| ||||| || || ||| || || |||||| || | |||
Sbjct 179077 AACTACCAGTTCTTTGGTTTCAAGACACTCGAGCGTTCATATCTCCTCCGCATAAACGGC 179018
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| ||| ||||||| || || || |||| ||||| || || | || |||||||| |
Sbjct 179017 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGAT 178958
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
||||| ||| | | | | | | ||||| | ||| | || |||
Sbjct 178957 GACATTGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 178898
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| ||||| ||||||||||||| || || ||||| ||||| || || ||||| ||
Sbjct 178897 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 178838
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||| |||| ||| |||| ||||| |||||| ||||||| ||
Sbjct 178837 GAC-ATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGAT 178779
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || ||| || || || || ||| || ||| | | ||||| | || || ||
Sbjct 178778 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 178719
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
|||| | || || || || || || ||||| ||| | || |||||||| || | ||||||
Sbjct 178718 CATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAA 178659
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| | || ||||| || ||||||||||| | | | ||| | ||||| |||| ||
Sbjct 178658 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCT 178599
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
|||||| |||||||| ||||| | ||| | |||||||| |||||||||||||| ||
Sbjct 178598 CGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 178539
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
|| | || | || ||||||||||| || ||| | || ||||| || ||||| ||
Sbjct 178538 GGAGGTCCGCGCTCGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCG 178479
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
||| | | ||| | ||||| || | || || || || || || || || ||||
Sbjct 178478 TGTCCAAGACAACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGA 178419
Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433
|| | || || || | | |||| | | ||||| |||| ||||| | |
Sbjct 178418 TGTCTACGGTGAAGAATTCGAGGCCCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCG 178359
Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493
|| | | || ||||| ||| | || | || | ||| ||||| ||
Sbjct 178358 CGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATTCTTGAGGCGCAGACCGAGACTGG 178299
Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553
|| |||| || | | ||||||| || |||| |||| ||||||| || |||||||
Sbjct 178298 TAACCCCTTTATGCTTTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 178239
Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613
||| ||||| || ||||||| |||||||| ||||| ||| |||| || ||| |
Sbjct 178238 TACCATCCGCAGCTCCAACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGT 178179
Query 94614 TGCTGTGTGTAACCTGG 94630
|| || || ||| |||
Sbjct 178178 CGCCGTTTGCAACTTGG 178162
Score = 105 bits (116), Expect = 7e-18
Identities = 208/302 (69%), Gaps = 12/302 (4%)
Strand=Plus/Minus
Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136
||||||||| ||| ||||||| | || |||||||| || |||||||| | |||||
Sbjct 177727 CACGGTGTGCGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATT 177668
Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196
|| ||||||||||||| ||||| || | |||||||||| | || | | || || |||
Sbjct 177667 CTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTC 177608
Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGT 95255
|| || || |||| || ||||| | || ||||| || || | ||||| |
Sbjct 177607 GCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCT 177549
Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACG--GCTCCG---TCCAGAAC 95310
|||| ||| || | ||||||| | | |||| | | | | || ||||
Sbjct 177548 GTGGTCTGAGAACATGAAGAACCGTATCAT---CGCCGATGGAGGTTCGATTGCCAG--G 177494
Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370
|| || | || || ||||| | ||| | || ||||||||||| ||||||||| |||||
Sbjct 177493 ATTCCCAACATCCCTGAGGAGACAAAGACACTTTACAAGACCGTCTGGGAGATCTCGCAG 177434
Query 95371 CG 95372
||
Sbjct 177433 CG 177432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494722235289760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |