Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq15 253 2e-62 >seq15 Length=714589 Score = 253 bits (280), Expect = 2e-62 Identities = 608/917 (66%), Gaps = 2/917 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||||| ||||| || || ||| || || |||||| || | ||| Sbjct 179077 AACTACCAGTTCTTTGGTTTCAAGACACTCGAGCGTTCATATCTCCTCCGCATAAACGGC 179018 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| ||||||| || || || |||| ||||| || || | || |||||||| | Sbjct 179017 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGAT 178958 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | ||| | || ||| Sbjct 178957 GACATTGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 178898 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| ||||||||||||| || || ||||| ||||| || || ||||| || Sbjct 178897 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 178838 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| |||| ||| |||| ||||| |||||| ||||||| || Sbjct 178837 GAC-ATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGAT 178779 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || ||| || || || || ||| || ||| | | ||||| | || || || Sbjct 178778 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 178719 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| | || || || || || || ||||| ||| | || |||||||| || | |||||| Sbjct 178718 CATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAA 178659 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || ||||| || ||||||||||| | | | ||| | ||||| |||| || Sbjct 178658 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCT 178599 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| ||||| | ||| | |||||||| |||||||||||||| || Sbjct 178598 CGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 178539 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || ||||||||||| || ||| | || ||||| || ||||| || Sbjct 178538 GGAGGTCCGCGCTCGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCG 178479 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| | | ||| | ||||| || | || || || || || || || || |||| Sbjct 178478 TGTCCAAGACAACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGA 178419 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || | || || || | | |||| | | ||||| |||| ||||| | | Sbjct 178418 TGTCTACGGTGAAGAATTCGAGGCCCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCG 178359 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 || | | || ||||| ||| | || | || | ||| ||||| || Sbjct 178358 CGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATTCTTGAGGCGCAGACCGAGACTGG 178299 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || |||| || | | ||||||| || |||| |||| ||||||| || ||||||| Sbjct 178298 TAACCCCTTTATGCTTTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 178239 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || ||||||| |||||||| ||||| ||| |||| || ||| | Sbjct 178238 TACCATCCGCAGCTCCAACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGT 178179 Query 94614 TGCTGTGTGTAACCTGG 94630 || || || ||| ||| Sbjct 178178 CGCCGTTTGCAACTTGG 178162 Score = 105 bits (116), Expect = 7e-18 Identities = 208/302 (69%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||||||| ||| ||||||| | || |||||||| || |||||||| | ||||| Sbjct 177727 CACGGTGTGCGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATT 177668 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| ||||| || | |||||||||| | || | | || || ||| Sbjct 177667 CTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTC 177608 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGT 95255 || || || |||| || ||||| | || ||||| || || | ||||| | Sbjct 177607 GCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCT 177549 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACG--GCTCCG---TCCAGAAC 95310 |||| ||| || | ||||||| | | |||| | | | | || |||| Sbjct 177548 GTGGTCTGAGAACATGAAGAACCGTATCAT---CGCCGATGGAGGTTCGATTGCCAG--G 177494 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 || || | || || ||||| | ||| | || ||||||||||| ||||||||| ||||| Sbjct 177493 ATTCCCAACATCCCTGAGGAGACAAAGACACTTTACAAGACCGTCTGGGAGATCTCGCAG 177434 Query 95371 CG 95372 || Sbjct 177433 CG 177432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722235289760