Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq15 176 4e-39
seq4 145 8e-30
seq1 116 4e-21
seq6 89.7 5e-13
>seq15
Length=714589
Score = 176 bits (194), Expect = 4e-39
Identities = 934/1476 (63%), Gaps = 53/1476 (4%)
Strand=Plus/Plus
Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068
||||| | || ||| | ||||||| || || ||||| || || | || || | ||
Sbjct 177564 AGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAA 177623
Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128
|| | ||| ||| | || || ||| | ||||| ||||| || || || | ||||
Sbjct 177624 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAG 177683
Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188
|| || |||||| || | | || || || |||| |||||| | ||| | |||
Sbjct 177684 GCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCC 177743
Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA-- 153246
|||| | | ||| ||||| || | | || || | |||||||| |||||||| |
Sbjct 177744 TTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGG 177803
Query 153247 ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCC 153305
| || ||| | | ||||| || | | || |||| || | | || | |
Sbjct 177804 ATAC-CCTGGGATA-CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTG-CG 177860
Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365
| ||||| | ||| || ||| ||| ||||| || |||||| | |||||
Sbjct 177861 ATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGC 177920
Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425
||||| || |||| | || | ||| || | ||||| || || |||||
Sbjct 177921 TTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCT 177980
Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGGG 153484
|| | ||| | ||||||||||| || ||||||||| | || ||| | | ||
Sbjct 177981 TGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGG 178039
Query 153485 ATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTT 153544
||||| ||| ||||| || ||||| | |||||| || |||| || | | |
Sbjct 178040 GTAGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTG 178099
Query 153545 AAGTTTCTCGAAATCATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGGC 153598
|| |||| ||| ||| | || | | | |||||| | | || |||
Sbjct 178100 GAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAA------AAGAAGGCAGGGC 178153
Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGC 153658
|| ||| |||| || || ||||| ||| || | | |||||| ||| ||||| |
Sbjct 178154 AAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGT 178213
Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718
||| | |||| || ||| || | || | ||| ||||| ||||| ||||| ||
Sbjct 178214 GCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGC 178273
Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACCT 153775
||| ||| | ||||| | || || |||||| |||| || | || |||
Sbjct 178274 GTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCA 178333
Query 153776 ATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCT------CGTATCG 153829
| || | || || || || || |||||||| | ||| |||| |
Sbjct 178334 AAGC---TTTTGTGCGCGAACAGTCTC------GCGGCCCTTGTTCTGCTTCTCGTAGCT 178384
Query 153830 CTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGG 153889
||||||||| ||| || || || |||||| ||||||||||| || |||| | |||
Sbjct 178385 CTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGG 178444
Query 153890 ACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949
||||| || | ||| | ||| | | | ||| || |||||| || || || | |||
Sbjct 178445 GCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCA 178504
Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAG 154006
|| ||||| | ||| ||||| || | |||||| ||| | ||||| |||
Sbjct 178505 CAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAG 178561
Query 154007 ATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTT 154066
| || | || | ||| ||| |||||||| || || | ||||| ||| | |||||||
Sbjct 178562 GTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 178621
Query 154067 ACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123
||| || || ||||| ||||| | ||| | | |||||| | || || | ||||||
Sbjct 178622 GCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 178681
Query 154124 TTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183
|| ||| | | || ||||| || | ||| | ||| || || | |
Sbjct 178682 AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCG 178741
Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGC 154241
|||||||| | |||||| ||||| || ||| || || || |||| | | ||
Sbjct 178742 GTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGT 178799
Query 154242 GTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATT 154301
|| ||| |||||||||||||| || || | | ||| | ||| || || |||||
Sbjct 178800 GTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATT 178859
Query 154302 TGCGG-AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTG 154360
|| || ||| | || ||||| || | || || ||||| || || |||||
Sbjct 178860 TGTGGTGATG-GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTG 178918
Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420
||| | ||| || |||||||| | || || ||||| ||||||||||| | ||
Sbjct 178919 AGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGC 178978
Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456
|| |||||||||||||| || || || ||||||||
Sbjct 178979 AACACGCATGAGCATGTGTTGTGGGCGCTCGGCGAC 179014
>seq4
Length=2069545
Score = 145 bits (160), Expect = 8e-30
Identities = 504/764 (66%), Gaps = 27/764 (4%)
Strand=Plus/Minus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||||||| || ||| ||||| | || |||||||| ||| ||||| ||
Sbjct 1053726 AACGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGC 1053667
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGC---AGCGGAACGTTCCGGAACTCGAGGCG 52202
|| || ||| ||||| | ||| || | |||| | || | | ||||||
Sbjct 1053666 ATTGTCAACGAGAACCTTGTTGAGCG-ATTCTCTAGCGAA--GTACAAATCCCCGAGGCA 1053610
Query 52203 CAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTG 52262
| || ||| || ||| ||| | | || ||| ||| ||| | |||| ||| ||||
Sbjct 1053609 CGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTCTCTG 1053550
Query 52263 CTCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG---CTGCTGAATGCGTT 52318
||||| || || | | | || |||| | ||| ||| || | || | || || |
Sbjct 1053549 CTCATCGA-CACAT-ACATTAGC-GAGCCCAAGCAGCG-CAGGTACCTCTTCAACGCCAT 1053494
Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378
||| || | || ||| | ||||| ||||| | ||||| || |||||| | |
Sbjct 1053493 CGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAA 1053434
Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438
| | |||| | ||| | ||| | || || |||||| || ||||| | || ||
Sbjct 1053433 GAACTCCACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAG 1053374
Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498
||| || ||| ||||||| | | || | | || | |||||||| || || ||
Sbjct 1053373 CGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATT 1053314
Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTA 52558
| ||||||| | || || || ||||| || ||||||| ||||| || ||||| ||
Sbjct 1053313 CTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTT 1053254
Query 52559 CAAGACGCGCGT-GACCGAAAAATTGGATTCG-GACACGATCCTGAGC-ATGTTCAAGGA 52615
| | | | | || ||| || | | || | || |||| || ||| ||
Sbjct 1053253 CT---CTCTCCTCGA--GAACAAGCCCAGCCCAGAGTCTGTCA-GAGCTATCATCACTGA 1053200
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
|| || | || || ||||||| || | | ||| || || || ||||| |||||
Sbjct 1053199 AGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCAT 1053140
Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
|||||| | || ||||||| | ||||||||||| || || || |||||| || || |
Sbjct 1053139 GAACGCT-ACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCC 1053081
Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
|||| | | ||| || || | |||| ||| || || || || ||| | ||||||||
Sbjct 1053080 TCGGCAACGTCAAGGT-CTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCT 1053022
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | || ||||||||||| ||||||||||| |||||||| ||
Sbjct 1053021 CTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1052978
>seq1
Length=2771824
Score = 116 bits (128), Expect = 4e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||||||| | |||||| ||| || | || || ||||
Sbjct 1871548 GACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCG 1871607
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||||||||||||||| ||||| || ||||| ||| || || |
Sbjct 1871608 AAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACG 1871667
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | || |||||||||| ||| | || || |||||||| || ||
Sbjct 1871668 TTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTG 1871727
Query 138601 ACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 1871728 ACGAAGATTTGCAT 1871741
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || || || | | |||||||| || |||||||||||
Sbjct 1871287 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 1871346
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || || || ||||| | | || |||||||| ||||| |||||
Sbjct 1871347 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 1871406
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || |||| |||| || | |||||| | ||||| ||
Sbjct 1871407 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG-TCGATCGTGTCGCTAGACTCGAC 1871465
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || ||||| || ||||| ||||||||
Sbjct 1871466 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 89.7 bits (98), Expect = 5e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || || || |||||||||||| || ||||
Sbjct 1871776 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 1871835
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || || || || |||||||| || || || ||||| ||| ||| || |
Sbjct 1871836 AAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACG 1871895
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
| || | |||||||| ||||| ||||| | || | || || || ||||
Sbjct 1871896 TTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 1871947
>seq6
Length=1662277
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || || | | |||||||||| || |||||||||||| |
Sbjct 181381 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 181322
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||||| || |||| |||| || |||||||||||||| ||
Sbjct 181321 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 181262
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 181261 ATGCCCTCCTTGTC 181248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261432288320
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