Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 176 4e-39 seq4 145 8e-30 seq1 116 4e-21 seq6 89.7 5e-13 >seq15 Length=714589 Score = 176 bits (194), Expect = 4e-39 Identities = 934/1476 (63%), Gaps = 53/1476 (4%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || ||| | ||||||| || || ||||| || || | || || | || Sbjct 177564 AGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAA 177623 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||| ||| | || || ||| | ||||| ||||| || || || | |||| Sbjct 177624 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAG 177683 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188 || || |||||| || | | || || || |||| |||||| | ||| | ||| Sbjct 177684 GCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCC 177743 Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA-- 153246 |||| | | ||| ||||| || | | || || | |||||||| |||||||| | Sbjct 177744 TTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGG 177803 Query 153247 ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCC 153305 | || ||| | | ||||| || | | || |||| || | | || | | Sbjct 177804 ATAC-CCTGGGATA-CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTG-CG 177860 Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365 | ||||| | ||| || ||| ||| ||||| || |||||| | ||||| Sbjct 177861 ATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGC 177920 Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425 ||||| || |||| | || | ||| || | ||||| || || ||||| Sbjct 177921 TTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCT 177980 Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGGG 153484 || | ||| | ||||||||||| || ||||||||| | || ||| | | || Sbjct 177981 TGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGG 178039 Query 153485 ATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTT 153544 ||||| ||| ||||| || ||||| | |||||| || |||| || | | | Sbjct 178040 GTAGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTG 178099 Query 153545 AAGTTTCTCGAAATCATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGGC 153598 || |||| ||| ||| | || | | | |||||| | | || ||| Sbjct 178100 GAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAA------AAGAAGGCAGGGC 178153 Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGC 153658 || ||| |||| || || ||||| ||| || | | |||||| ||| ||||| | Sbjct 178154 AAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGT 178213 Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718 ||| | |||| || ||| || | || | ||| ||||| ||||| ||||| || Sbjct 178214 GCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGC 178273 Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACCT 153775 ||| ||| | ||||| | || || |||||| |||| || | || ||| Sbjct 178274 GTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCA 178333 Query 153776 ATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCT------CGTATCG 153829 | || | || || || || || |||||||| | ||| |||| | Sbjct 178334 AAGC---TTTTGTGCGCGAACAGTCTC------GCGGCCCTTGTTCTGCTTCTCGTAGCT 178384 Query 153830 CTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGG 153889 ||||||||| ||| || || || |||||| ||||||||||| || |||| | ||| Sbjct 178385 CTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGG 178444 Query 153890 ACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 ||||| || | ||| | ||| | | | ||| || |||||| || || || | ||| Sbjct 178445 GCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCA 178504 Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAG 154006 || ||||| | ||| ||||| || | |||||| ||| | ||||| ||| Sbjct 178505 CAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAG 178561 Query 154007 ATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTT 154066 | || | || | ||| ||| |||||||| || || | ||||| ||| | ||||||| Sbjct 178562 GTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 178621 Query 154067 ACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||| || || ||||| ||||| | ||| | | |||||| | || || | |||||| Sbjct 178622 GCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 178681 Query 154124 TTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183 || ||| | | || ||||| || | ||| | ||| || || | | Sbjct 178682 AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCG 178741 Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGC 154241 |||||||| | |||||| ||||| || ||| || || || |||| | | || Sbjct 178742 GTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGT 178799 Query 154242 GTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATT 154301 || ||| |||||||||||||| || || | | ||| | ||| || || ||||| Sbjct 178800 GTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATT 178859 Query 154302 TGCGG-AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTG 154360 || || ||| | || ||||| || | || || ||||| || || ||||| Sbjct 178860 TGTGGTGATG-GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTG 178918 Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420 ||| | ||| || |||||||| | || || ||||| ||||||||||| | || Sbjct 178919 AGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGC 178978 Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || |||||||||||||| || || || |||||||| Sbjct 178979 AACACGCATGAGCATGTGTTGTGGGCGCTCGGCGAC 179014 >seq4 Length=2069545 Score = 145 bits (160), Expect = 8e-30 Identities = 504/764 (66%), Gaps = 27/764 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||||||| || ||| ||||| | || |||||||| ||| ||||| || Sbjct 1053726 AACGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGC 1053667 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGC---AGCGGAACGTTCCGGAACTCGAGGCG 52202 || || ||| ||||| | ||| || | |||| | || | | |||||| Sbjct 1053666 ATTGTCAACGAGAACCTTGTTGAGCG-ATTCTCTAGCGAA--GTACAAATCCCCGAGGCA 1053610 Query 52203 CAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTG 52262 | || ||| || ||| ||| | | || ||| ||| ||| | |||| ||| |||| Sbjct 1053609 CGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTCTCTG 1053550 Query 52263 CTCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG---CTGCTGAATGCGTT 52318 ||||| || || | | | || |||| | ||| ||| || | || | || || | Sbjct 1053549 CTCATCGA-CACAT-ACATTAGC-GAGCCCAAGCAGCG-CAGGTACCTCTTCAACGCCAT 1053494 Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378 ||| || | || ||| | ||||| ||||| | ||||| || |||||| | | Sbjct 1053493 CGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAA 1053434 Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438 | | |||| | ||| | ||| | || || |||||| || ||||| | || || Sbjct 1053433 GAACTCCACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAG 1053374 Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498 ||| || ||| ||||||| | | || | | || | |||||||| || || || Sbjct 1053373 CGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATT 1053314 Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTA 52558 | ||||||| | || || || ||||| || ||||||| ||||| || ||||| || Sbjct 1053313 CTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTT 1053254 Query 52559 CAAGACGCGCGT-GACCGAAAAATTGGATTCG-GACACGATCCTGAGC-ATGTTCAAGGA 52615 | | | | | || ||| || | | || | || |||| || ||| || Sbjct 1053253 CT---CTCTCCTCGA--GAACAAGCCCAGCCCAGAGTCTGTCA-GAGCTATCATCACTGA 1053200 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 || || | || || ||||||| || | | ||| || || || ||||| ||||| Sbjct 1053199 AGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCAT 1053140 Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 |||||| | || ||||||| | ||||||||||| || || || |||||| || || | Sbjct 1053139 GAACGCT-ACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCC 1053081 Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793 |||| | | ||| || || | |||| ||| || || || || ||| | |||||||| Sbjct 1053080 TCGGCAACGTCAAGGT-CTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCT 1053022 Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | || ||||||||||| ||||||||||| |||||||| || Sbjct 1053021 CTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1052978 >seq1 Length=2771824 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | |||||| ||| || | || || |||| Sbjct 1871548 GACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCG 1871607 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||||||||| ||||| || ||||| ||| || || | Sbjct 1871608 AAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACG 1871667 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | || |||||||||| ||| | || || |||||||| || || Sbjct 1871668 TTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTG 1871727 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 1871728 ACGAAGATTTGCAT 1871741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | |||||||| || ||||||||||| Sbjct 1871287 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 1871346 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || ||||| | | || |||||||| ||||| ||||| Sbjct 1871347 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 1871406 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || |||| |||| || | |||||| | ||||| || Sbjct 1871407 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG-TCGATCGTGTCGCTAGACTCGAC 1871465 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || ||||| |||||||| Sbjct 1871466 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || || |||||||||||| || |||| Sbjct 1871776 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 1871835 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || || || |||||||| || || || ||||| ||| ||| || | Sbjct 1871836 AAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACG 1871895 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 | || | |||||||| ||||| ||||| | || | || || || |||| Sbjct 1871896 TTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 1871947 >seq6 Length=1662277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | |||||||||| || |||||||||||| | Sbjct 181381 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 181322 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| || |||| |||| || |||||||||||||| || Sbjct 181321 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 181262 Query 138508 ATACCTTCTTTGTC 138521 || || || ||||| Sbjct 181261 ATGCCCTCCTTGTC 181248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261432288320