Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 3e-22
seq1 105 6e-18
seq15 91.5 1e-13
seq6 82.4 7e-11
>seq4
Length=2069545
Score = 120 bits (132), Expect = 3e-22
Identities = 250/368 (68%), Gaps = 27/368 (7%)
Strand=Plus/Minus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
|||||||| || || || ||||||||| ||||| | ||||| ||| |||||||| ||
Sbjct 1053330 ATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGAC 1053271
Query 47283 TTTGCCTG---TCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCA----C 47335
|| ||||| ||||| || | || ||| | ||| | | ||||| |
Sbjct 1053270 TTCGCCTGCCTTCTCTTCTCTCTC-CTCGAG---AACAA------GCCCAGCCCAGAGTC 1053221
Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395
||||| | || | | |||||||||| |||||| |||||| || ||| || ||
Sbjct 1053220 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 1053161
Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455
|| || | | || |||||||| | ||| | | |||||||| || |||||
Sbjct 1053160 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 1053101
Query 47456 CGACCGCCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510
||||| ||||| | || || || || |||| | |||||| || || ||
Sbjct 1053100 TGACCGTCTGCTGTTGGCCCTCGGC-AACGT----CAAGGTCTACCACGCCACCAACCCC 1053046
Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570
||||| || ||| | |||||||| || | || ||||||||||| |||||||||||||||
Sbjct 1053045 TTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTC 1052986
Query 47571 GGCGAATA 47578
||||| ||
Sbjct 1052985 GGCGACTA 1052978
>seq1
Length=2771824
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| || || | || | |||||| || | |||||||| || || || ||||| ||
Sbjct 1871286 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 1871345
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||| || || || ||||| || |||||| | || | |||||||| || |||||
Sbjct 1871346 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGG 1871405
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||| | | |||| ||||| || ||||||
Sbjct 1871406 GATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGAC 1871465
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || || ||||| ||||| || ||||| ||||||||
Sbjct 1871466 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || || || || ||||| ||| || |||||| ||| || ||||| || ||
Sbjct 1872054 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCG 1872113
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 1872114 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 1872173
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | |||| ||||| | | ||| || |||| ||| | || || |||||
Sbjct 1872174 ACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 1872226
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/176 (72%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| || ||||| || || || || |||||
Sbjct 1871773 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 1871832
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | || |||||||| ||||| |||||||||||||| ||| || ||||
Sbjct 1871833 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 1871892
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| |||| |||||| | ||| || || | || | || ||||||||||
Sbjct 1871893 ACGTTG-TCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 1871947
>seq15
Length=714589
Score = 91.5 bits (100), Expect = 1e-13
Identities = 199/290 (69%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACGAACACATTTGGG 147331
||| ||||||||||||||||| ||||| ||| | || ||||| || || ||||||| |
Sbjct 178805 GTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATG-AGGAAGCATGACGACATTTGTG 178863
Query 147332 GACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCA-GACTC 147390
| |||||||| |||| ||| || |||||| ||||| || | || |
Sbjct 178864 GTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGAC 178922
Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450
|| | | || || || ||||| || || |||||| ||||||||| | | || ||
Sbjct 178923 ATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACA 178982
Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCA 147510
|||||||||||||| || || || || || | | | | || | | |||||| |
Sbjct 178983 CGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATAT-GA 179041
Query 147511 TTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
| || || || |||||||||||| ||| ||||| | |||| | || ||
Sbjct 179042 ACGCTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGT 179091
>seq6
Length=1662277
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/157 (72%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 181381 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 181322
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || ||||| ||| |||||| ||||| || || || ||
Sbjct 181321 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 181262
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042
||||||||||||||| ||| || ||||| |||||
Sbjct 181261 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 181225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499872773440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |