Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq15 114 1e-20 >seq15 Length=714589 Score = 114 bits (126), Expect = 1e-20 Identities = 292/441 (66%), Gaps = 5/441 (1%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||||||||| || ||||| ||||||||||| || ||| | ||| | ||||| Sbjct 179017 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGAT 178958 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || || || | ||| || ||||| | ||||||||||| | ||||| ||||| Sbjct 178957 GACATTGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 178898 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || |||||| ||| ||||| | || || |||| || || || | || Sbjct 178897 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 178838 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGAT 123136 | || || ||||||||| ||| || || || || | | || || |||||||| Sbjct 178837 GACATGAAGGAGGACAGCATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGAT 178779 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 ||||| | ||||| || ||| | ||||||||| | | | | || Sbjct 178778 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 178719 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| | |||| |||||| | ||| ||| ||||||| || || ||||| || Sbjct 178718 CATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAA 178659 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCT 123313 | | | || | ||||||||||| || ||| ||| ||| || | || ||||| || Sbjct 178658 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCT 178599 Query 123314 AGAACCGTGGCACGTTGATGT 123334 || || ||||||| ||| || Sbjct 178598 CGAGCCATGGCACGCTGACGT 178578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002318593760