Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq15 250 3e-61
seq4 91.5 2e-13
>seq15
Length=714589
Score = 250 bits (276), Expect = 3e-61
Identities = 917/1425 (64%), Gaps = 17/1425 (1%)
Strand=Plus/Plus
Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923
|||||||| |||||||| |||||| || | ||||||||||| |||||||||
Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644
Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983
|| |||||||| ||||| |||| || || | |||||||| || ||||||||||| |||
Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704
Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043
|| || |||||| | ||| | | ||| ||||| || | ||||||| ||
Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764
Query 116044 TTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 116103
| | | | | | ||||||||| ||||||||||||| ||||| | || |||
Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 177824
Query 116104 CCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGG 116160
|| || | |||| || || | ||| |||| || | ||| | | |||
Sbjct 177825 CCTTCGTAGGTCTTGTAAGGAC---CAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGA 177881
Query 116161 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 116220
|| || || || || |||||||| || | || | ||| || ||||| || ||
Sbjct 177882 GCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCG 177941
Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280
|| | || ||| | || |||| || |||||||| ||||| | || || ||
Sbjct 177942 AAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGT 178001
Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACC 116340
|| || | | || || || || || || || || ||||| | |
Sbjct 178002 CGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGATC 178061
Query 116341 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACT 116399
| || | || ||||||||| | ||||| ||| || ||||| | | | ||||| ||
Sbjct 178062 TTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACA 178121
Query 116400 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 116459
|| | || | | |||| | ||| ||||| | || |||| || || || | |
Sbjct 178122 CCG-GCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCGAC 178180
Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519
|||||| | |||||||||| | ||| || || ||||| || || || ||||| ||
Sbjct 178181 CTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTACC 178240
Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579
| |||||| || || ||| ||| || || |||||||| |||||| | || | ||
Sbjct 178241 GAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACC 178300
Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTT 116639
||||| || || | || ||||| || | ||| | | || | ||||| ||
Sbjct 178301 AGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCGCG 178360
Query 116640 GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTC 116699
| | || || |||||| | ||| |||||||| || |||||||| | ||
Sbjct 178361 GCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATC 178420
Query 116700 TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 116759
| ||| || || || | || || | ||| | ||| | || || | || ||
Sbjct 178421 GGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACG 178480
Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 116819
||||||||||||||| || ||||| || || |||||||||| ||| ||| | || ||
Sbjct 178481 CTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTC 178540
Query 116820 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 116879
| || || || |||| || | ||| | | || || |||||||| || || ||
Sbjct 178541 CTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAG 178600
Query 116880 GTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGC 116936
||| | |||| | || ||| ||| |||||| ||||| | || ||
Sbjct 178601 GTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTT 178660
Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATA 116994
||| |||| || ||||| ||||||| ||| | |||| || || || || |||| ||
Sbjct 178661 GTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTA 178720
Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054
||| | | || | | ||| | || | |||||||| || || ||| |||
Sbjct 178721 TGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAG 178778
Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114
|| || || | |||| || |||| || || ||||| ||| |||| | ||
Sbjct 178779 ATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCG 178838
Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174
||||||||||| |||||||||||| |||||| || |||||||| | || || |
Sbjct 178839 ATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAG 178898
Query 117175 GCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233
||||| |||| ||| ||| ||||| | ||||||||||| | | | ||||||
Sbjct 178899 GCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTC 178957
Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278
|| |||||||| || | | || ||||| | ||||| ||| ||
Sbjct 178958 ATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002
>seq4
Length=2069545
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|||||||||||||||||||| || || ||||| ||||| ||||| ||||| ||||||
Sbjct 1053284 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 1053343
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | |||||| || | || || || ||||||||| ||||| ||| |||||
Sbjct 1053344 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 1053403
Query 127658 GCAAATAGACGCTCGGCAAA 127677
|||| || || | ||| ||
Sbjct 1053404 GCAACGAGGCGGTTGGCGAA 1053423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506003660960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |