Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq15 250 3e-61 seq4 91.5 2e-13 >seq15 Length=714589 Score = 250 bits (276), Expect = 3e-61 Identities = 917/1425 (64%), Gaps = 17/1425 (1%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| |||||| || | ||||||||||| ||||||||| Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| ||||| |||| || || | |||||||| || ||||||||||| ||| Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043 || || |||||| | ||| | | ||| ||||| || | ||||||| || Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764 Query 116044 TTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 116103 | | | | | | ||||||||| ||||||||||||| ||||| | || ||| Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 177824 Query 116104 CCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGG 116160 || || | |||| || || | ||| |||| || | ||| | | ||| Sbjct 177825 CCTTCGTAGGTCTTGTAAGGAC---CAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGA 177881 Query 116161 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 116220 || || || || || |||||||| || | || | ||| || ||||| || || Sbjct 177882 GCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCG 177941 Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280 || | || ||| | || |||| || |||||||| ||||| | || || || Sbjct 177942 AAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGT 178001 Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACC 116340 || || | | || || || || || || || || ||||| | | Sbjct 178002 CGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGATC 178061 Query 116341 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACT 116399 | || | || ||||||||| | ||||| ||| || ||||| | | | ||||| || Sbjct 178062 TTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACA 178121 Query 116400 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 116459 || | || | | |||| | ||| ||||| | || |||| || || || | | Sbjct 178122 CCG-GCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCGAC 178180 Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||| | |||||||||| | ||| || || ||||| || || || ||||| || Sbjct 178181 CTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTACC 178240 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 | |||||| || || ||| ||| || || |||||||| |||||| | || | || Sbjct 178241 GAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACC 178300 Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTT 116639 ||||| || || | || ||||| || | ||| | | || | ||||| || Sbjct 178301 AGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCGCG 178360 Query 116640 GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTC 116699 | | || || |||||| | ||| |||||||| || |||||||| | || Sbjct 178361 GCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATC 178420 Query 116700 TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 116759 | ||| || || || | || || | ||| | ||| | || || | || || Sbjct 178421 GGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACG 178480 Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 116819 ||||||||||||||| || ||||| || || |||||||||| ||| ||| | || || Sbjct 178481 CTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTC 178540 Query 116820 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 116879 | || || || |||| || | ||| | | || || |||||||| || || || Sbjct 178541 CTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAG 178600 Query 116880 GTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGC 116936 ||| | |||| | || ||| ||| |||||| ||||| | || || Sbjct 178601 GTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTT 178660 Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATA 116994 ||| |||| || ||||| ||||||| ||| | |||| || || || || |||| || Sbjct 178661 GTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTA 178720 Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 ||| | | || | | ||| | || | |||||||| || || ||| ||| Sbjct 178721 TGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAG 178778 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || || || | |||| || |||| || || ||||| ||| |||| | || Sbjct 178779 ATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCG 178838 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 ||||||||||| |||||||||||| |||||| || |||||||| | || || | Sbjct 178839 ATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAG 178898 Query 117175 GCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 ||||| |||| ||| ||| ||||| | ||||||||||| | | | |||||| Sbjct 178899 GCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTC 178957 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 || |||||||| || | | || ||||| | ||||| ||| || Sbjct 178958 ATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002 >seq4 Length=2069545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||||||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 1053284 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 1053343 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 1053344 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 1053403 Query 127658 GCAAATAGACGCTCGGCAAA 127677 |||| || || | ||| || Sbjct 1053404 GCAACGAGGCGGTTGGCGAA 1053423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506003660960