Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15 132 8e-26 >seq15 Length=714589 Score = 132 bits (146), Expect = 8e-26 Identities = 334/499 (67%), Gaps = 13/499 (3%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || ||||| ||||||| | ||||| | || | | |||||||||||| Sbjct 177234 TCTTGGTCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATG 177293 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || || ||| || | |||||| |||| | |||| || | Sbjct 177294 CCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTGATCTTGCCCATAGTA 177353 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||||| |||||||| ||||| ||||| || |||| | || || ||| Sbjct 177354 GGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATAAAAGCACCACGGTCAGCG 177413 Query 204017 GCCATATTGATAATGGTCTT--CTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTG 204073 ||||| | || || |||| |||||| |||||||| || |||||| || |||| | Sbjct 177414 GCCATCTCAATGAT--TCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGTGTCT-TT 177470 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG---ATCGAGCCGTTGTCGGCCATCAGTCTC 204130 || | | ||| || || | ||||| ||||| || ||||| || | | Sbjct 177471 GTCTCCTCAGG--GATGTTGGGA-ATCCTGGCAATCGAACCTCCATCGGCGATGATACGG 177527 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || | | ||| ||||| |||| || || ||| | || |||||| Sbjct 177528 TTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTG 177587 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | | ||| || || || | || || | |||| | | |||| |||| |||| ||| Sbjct 177588 ACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCG 177647 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || |||||||||||| | |||||| | ||| ||| || |||||||| || | |||| Sbjct 177648 AAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGC 177707 Query 204311 AGGGAGTTGCGCACACCGT 204329 || |||||||||||||||| Sbjct 177708 AGCGAGTTGCGCACACCGT 177726 Score = 95.1 bits (104), Expect = 2e-14 Identities = 346/529 (65%), Gaps = 12/529 (2%) Strand=Plus/Plus Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131 |||||| ||| | || || |||||| || || || || || || | || || || Sbjct 178388 GTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCA 178447 Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191 ||| || | ||| | | ||||| || | || ||| || ||||| |||||||| Sbjct 178448 CATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAG 178507 Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251 | |||| || ||||| || || | | | || | || ||||||| || ||| || Sbjct 178508 GGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 178567 Query 205252 CCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCT 205310 ||||| | | ||| |||||||| ||||| | | | ||| | || ||||| | || Sbjct 178568 G-AAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCT 178626 Query 205311 TGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCA 205370 |||| ||||||||||| || ||||| | |||| | || || ||||| || | | Sbjct 178627 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 178686 Query 205371 GACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGA 205428 ||||||| | || ||||| |||| |||| ||||| ||| | | || || | Sbjct 178687 GACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 178746 Query 205429 GATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CTCTTGCAGAGTGC 205487 | | |||||| ||||||| ||||| |||| || || ||||| || ||| Sbjct 178747 CGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGT 178803 Query 205488 TGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGAAGCCAGCT-T 205545 ||| ||||| ||||| || ||| || |||| | || |||| || | || | | Sbjct 178804 CGTAAATGCCGTCGATGCTGTCCTCCTTCA-TGTCGATGAGGAAGCATGACGACATTTGT 178862 Query 205546 GGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 || | | | |||||||||| ||| | ||| || |||||| ||||| Sbjct 178863 GGTGATGGT-GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAG 178910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153649447360