Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 156 5e-33 seq6 105 8e-18 seq3 98.7 1e-15 >seq1 Length=2771824 Score = 156 bits (172), Expect = 5e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| ||| |||||||||||| ||||||||||| ||||| || |||| || Sbjct 1871533 ACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCC 1871592 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| |||||||| || | ||||| ||||| | || | | ||||||||| | Sbjct 1871593 AACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1871652 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| ||| | | | |||||||| |||||||| || | ||||||||| || Sbjct 1871653 ATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTT 1871711 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||||||||| Sbjct 1871712 GCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||||| ||| ||||| ||||| ||||||||||| Sbjct 1872024 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 1872083 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||||||||| ||||||||||||||||| | || Sbjct 1872084 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 1872143 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | || |||||||||| |||||| |||||| Sbjct 1872144 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGA 1872174 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||| ||||| |||||||| || || || || | Sbjct 1871298 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 1871357 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| || | ||||||||||| | || | | |||||| Sbjct 1871358 GTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTT 1871417 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | ||||||||| || || || |||| || || Sbjct 1871418 GTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAAT 1871477 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || || |||||||| ||||| Sbjct 1871478 GGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| ||| |||||| || || ||||||||||| || ||||| |||| ||| Sbjct 1871761 ACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1871820 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| || | ||| ||||| || | || | || ||||||||| | Sbjct 1871821 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 1871880 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||| || || || || | |||||||| || Sbjct 1871881 ATCTTTGACTTGA-CGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTT 1871939 Query 46564 GCCCGTCA 46571 ||| |||| Sbjct 1871940 GCCGGTCA 1871947 >seq6 Length=1662277 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| | || ||||| ||||| |||||||| Sbjct 181346 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAA 181287 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||| ||||| | || | || |||||||||| |||||| ||||| Sbjct 181286 GATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 181231 >seq3 Length=2234992 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || ||||||||||| |||||||| Sbjct 1534133 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 1534192 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| ||||||||||| | || | || ||||||||| Sbjct 1534193 GATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 1534231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237297785120