Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 349 4e-91 seq14 143 3e-29 seq7 118 1e-21 seq15 116 5e-21 >seq1 Length=2771824 Score = 349 bits (386), Expect = 4e-91 Identities = 687/1011 (68%), Gaps = 5/1011 (0%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| || || ||||| | || ||||| ||||| |||||||||||||| Sbjct 2269359 TCACCAGACAGGATAGCAGCCTGGACGGCGGCACCGTAGGCGACAGCCTCATCGGGGTTG 2269300 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 2269299 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 2269240 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || |||||||||||||| || || || | || || || |||||||| | Sbjct 2269239 ATACGGGTGGATCCACCGACCAAGACAATCTCGTGGACGGAGGACTTGTCGATCTTAGCA 2269180 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || ||||| || ||||| ||||| | |||| || || || Sbjct 2269179 TCGCGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCT 2269120 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||| || ||||| || | || ||||| | || || || Sbjct 2269119 TCGAAACGAGCACGGGTGATGCTGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 2269060 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || | ||| || || ||||| Sbjct 2269059 TCGATGGAGGTCTGAGCGGAAGAGGACAGAGTGCGCTTGGCCCTCTCGCAAGCGGTTCGG 2269000 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || ||||| | ||| || | || ||||| || ||||| || ||||| Sbjct 2268999 AGACGACGGAGAGCACGAGCGTTGGAGGTCAAGTCCTTCTTGTGCTTACGCTTGAACTCG 2268940 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | | |||||| | ||| | ||||| || |||||||||||||| || || || Sbjct 2268939 TTGGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 2268880 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || || | ||||| || |||||||| | || ||| | || | || ||||| || ||| Sbjct 2268879 GCAGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGAGGGAGACATCGAAGGTA 2268820 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||||| ||| || || || ||||| || | || | ||||| || |||||| Sbjct 2268819 CCACCACCCAAGTCGAAGATAAGGACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCG 2268760 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || ||||| || || || || || || || || ||||| || ||| ||||| ||||| Sbjct 2268759 TAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 2268700 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | |||||||| || || || |||||||| ||||| ||||| || || || || ||| Sbjct 2268699 AGACCAGCATCTTTGGTAGCCTGACGTTGCGAGTCGTTGAAGTATGCGGGAACAGTGACG 2268640 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| | || | |||||| || || || || | || |||| ||||| | Sbjct 2268639 ACAGCGTTGTTAACGGTGCCACCGAGGTAGGACTCGGCAGTTTCCCTCATCTTGGTCAAG 2268580 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTC 7848 ||||| ||||| ||||| || | | || ||| ||| || || || || || || | Sbjct 2268579 ACCATAGATGAGATCTCCTCGGGTGTGAA-TGTCTTCTCCTCGCCCTTGAACTCGACCTG 2268521 Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 || | || || |||| | | ||| ||||| | | | | ||||| ||| | Sbjct 2268520 GATAACTGGCTT-GCCGC--CCTTGTCGATGACCTTGAAGGGGAAGTGCTTCATGTCGGC 2268464 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 ||||||| ||| | ||||| | ||||| || |||||||| || || || ||||| Sbjct 2268463 CTGGACCTCAGCGTCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACGGTGTT 2268404 Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 |||||||||||| ||||||||| || | ||| || || ||||| || Sbjct 2268403 GACGGGGTTCATGGCGACTTGGTTCTTTGCGGAGTCACCAATGAGACGCTC 2268353 >seq14 Length=784070 Score = 143 bits (158), Expect = 3e-29 Identities = 241/348 (69%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| |||||| | | ||||| || | |||||||||||| || || || || || Sbjct 594950 GAAGTGGTCAAGGAGGTTAGTGTCGAAGTCCTGACCACCCAAGTGGGTGTCTCCAGCAGT 595009 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| || | ||| || | |||| | | || ||||| || |||||||| Sbjct 595010 AGCCTTGACGGTGAAAACACCACCCTGGATGTGCAGAAGAGAGACATCGAAAGTACCACC 595069 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTA 7611 ||| || || | ||||| |||||| | || | ||| || | |||||||||| Sbjct 595070 ACCAAGATCGTAGATGAGGACGTTCCTCTCCTTGTCAGACTTTCCGGAACCGAGACCGTA 595129 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 |||||||| || || || || || || || ||||| ||| ||| ||||||||||| | Sbjct 595130 GGCGATAGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGC 595189 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || ||||| || || ||||| |||||||| ||||| || | ||| Sbjct 595190 ACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGAC 595249 Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || | | ||| ||||| ||||| | | || |||| || ||||| Sbjct 595250 GGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 595297 >seq7 Length=1637960 Score = 118 bits (130), Expect = 1e-21 Identities = 224/328 (68%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 673870 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCA 673811 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | | ||| | | | || | ||| || ||||||||||||| || | | |||| Sbjct 673810 GCCTGAATCTCGAGGATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCTACG 673751 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| ||| || ||| || |||||||| |||| ||| || || || ||||| Sbjct 673750 ------ACGTTGTCGGTGGCCTTGTCAAGACCGTAGGCGAGAGCGGCAGCGGTGGGTTCG 673697 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTC 7694 || | | ||| ||| ||| || ||||| || ||| | || || || || ||||| | Sbjct 673696 TTGACGACACGGAGAACGTTGAGACCAGCGAT--TTGACCGGCGTCCTTGGTAGCTTGAC 673639 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 673638 GCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCA 673579 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 || || || || | || ||||| || Sbjct 673578 TGTAGGACTCGGCAGTCTCCTTCATCTT 673551 >seq15 Length=714589 Score = 116 bits (128), Expect = 5e-21 Identities = 508/795 (64%), Gaps = 13/795 (2%) Strand=Plus/Plus Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343 |||||| ||| || || ||||| || || || ||||| | || || ||||| Sbjct 178198 ACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGC 178257 Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403 ||| || || ||||| |||||||||||| | ||| | || || || | || | | Sbjct 178258 TCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCT 178317 Query 105404 TAATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATT 105463 || ||| || | ||||| || || | ||| | | | || | ||| | || Sbjct 178318 CAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAG-TCTCGCGGCCCTTG-TTCTGCTT 178375 Query 105464 C--GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGC 105521 | ||| ||||||| || | || || |||| |||||| || || | || || Sbjct 178376 CTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 178435 Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581 || | || || | | || ||| || || | | || || || |||||||| | || Sbjct 178436 CTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTC 178495 Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAA 105641 |||||||||| ||| | ||||| || ||| | |||| || | || || ||| Sbjct 178496 AGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 178555 Query 105642 ACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGA 105701 || | || || || | | | || ||||||||||| || | |||| || | | Sbjct 178556 GCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGC 178615 Query 105702 CCCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757 ||| || ||| | || | | |||||| | || || ||| || || || | Sbjct 178616 ACCTGGGCGCTTGTTGCCACCCTGG-TCGACATAGCGAGCAGTGTTGTTGTATACACGGA 178674 Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817 ||| ||||| | ||| | |||||||| || || |||| || | ||| | | |||| Sbjct 178675 GCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCAC 178734 Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTT 105877 | | ||| |||| | |||||||| ||||| ||| ||| |||||| | Sbjct 178735 GAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT 178794 Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937 | | ||| |||||||| |||||||| || || ||||| | | || ||||| || || | Sbjct 178795 TGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACG 178854 Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAAC 105997 ||||||||||| ||||| || || ||||||| || || | || || |||| | Sbjct 178855 ACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA-- 178912 Query 105998 CTTTCGATA-ACG-CTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACC 106055 |||| || | | | ||||| || || | | | | ||||| || | || ||||| || Sbjct 178913 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCC 178972 Query 106056 AATAGCGACGCGCAT 106070 || ||| || ||||| Sbjct 178973 AACAGCAACACGCAT 178987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131561491040