Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15 253 3e-62 seq4 125 9e-24 >seq15 Length=714589 Score = 253 bits (280), Expect = 3e-62 Identities = 1116/1743 (64%), Gaps = 39/1743 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 |||||| ||||| ||||||| || || | || || || || || || ||||| | Sbjct 179003 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATTGAGAAGGC 178944 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| |||||| | ||||| | ||| |||| ||||| | || || | | Sbjct 178943 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 178885 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || |||||| ||| |||||||| || ||||| || | | ||||||| Sbjct 178884 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 178825 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||| | |||||||||| ||| |||| ||||| ||||| ||| |||| Sbjct 178824 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 178765 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | ||||| || | || | || | | || | | ||| || | | || || Sbjct 178764 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACT--GGCTCATACATCGGTGGCAC 178707 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || ||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 178706 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 178647 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||| | ||| ||| | ||| || |||| |||| || |||||||| Sbjct 178646 TGTCGACCAGGGTGGCAACAAGCGCCC--AGGTGCCT-TCGCCATCTACCTCGAGCCATG 178590 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | | |||||||| |||| ||||| || | ||||||| || Sbjct 178589 GCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 178530 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | ||||||||||||| ||| || |||||||| || |||||||||||| | || | Sbjct 178529 CGCT--CGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAA 178472 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 || | ||||| ||| | ||| | || || || || || || ||| |||||| | Sbjct 178471 GACAACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 178412 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGA-AAGTCGGGCGACTGCGAC 112258 ||||| || || || ||||| ||| | |||||| | | || |||| | | ||| Sbjct 178411 GGTGAAGAATTCGAGGCCCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCGC-GAGAC 178353 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || | || | | ||| | || ||||| || | || ||||||||||||| || Sbjct 178352 TGTTCGCGCACAAAAGCTTTGGTACGCCATTCTTGAGGCGCAGACCGAGACTGGTAACCC 178293 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | |||||||||||| ||||| || |||| ||||| || || ||||| | ||| || Sbjct 178292 CTTTATGCTTTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCAT 178233 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | || |||||| | || || || || |||| | || | |||||| || || Sbjct 178232 CCGCAGCTCCAACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGTCGCCGT 178173 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 || ||| | || || | || || || | ||| || | || || | |||| Sbjct 178172 TTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGTGTGTTTG 178114 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | || ||||||||||| || || |||||| ||| | |||| | || | Sbjct 178113 ACTTCAAGAAGCTCCACGAAGTCACACAAGTTGTCACCCGCAACTTGAACAAGATCATCG 178054 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | || ||||| || || || || || | | ||||| || || | Sbjct 178053 AAGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCG 177994 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 112677 || | ||||| |||||||| || |||| ||| | |||| | || || || | Sbjct 177993 GTATGGGTGTTCAAGGTCTTGCTGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAG 177934 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 ||||||| ||| | |||| | || |||||||| || || || || ||||| Sbjct 177933 ACGAAGCTAAGAAGCTCAACATCCAAATCTTTGAGACCATCTACCATGCTGCTCTCACTT 177874 Query 112738 CGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | | || | ||| ||| |||||| || | |||| || || ||||| | | Sbjct 177873 CCTCATGCGACATCGCAAAGGAGCTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTAT 177814 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTG 112855 | || || | || || | ||||||| |||| || | || | || | || ||||| Sbjct 177813 CCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACGCCTA-CTGACCTCTGGGACTG 177756 Query 112856 GGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 || |||| ||||| || ||| | ||| | || ||| || | || ||||| Sbjct 177755 GGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTGCGCAACTCGCTGCTCATTGCACC 177696 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 |||||||| |||||||| |||| || |||| || || || ||||| || || ||||| Sbjct 177695 CATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACAC 177636 Query 112976 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT-- 113033 | ||||||||| | | |||||| || ||||| | |||||||| ||| Sbjct 177635 CTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATGG 177578 Query 113034 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 113093 | | | ||||| || || ||||| ||||| || | |||||| | | || | Sbjct 177577 TTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATC 177518 Query 113094 AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTAC 113153 | || ||||| ||| | ||| | || || || || | |||| | ||| Sbjct 177517 GCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACACTTTAC 177458 Query 113154 CGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || ||||| ||| | |||| | ||||||| |||||||| || |||||| Sbjct 177457 AAGACCGTCTGGGAGATCTCGCAGCGAAGAA--TCATTGAGATGGCCGCTGACCGTGGTG 177400 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 || ||||| | |||| ||| |||| | |||| | || || ||| ||| Sbjct 177399 CTTTTATTGACC--AGTCTCAGTCGCTGAACATCCACATGAAGGAGCCTACTATGGGCAA 177342 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 113329 | || ||||||||||| | | |||||| |||||||| || || ||||| || || Sbjct 177341 GATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACTGGCATGTACTATCT 177282 Query 113330 CCG 113332 ||| Sbjct 177281 CCG 177279 >seq4 Length=2069545 Score = 125 bits (138), Expect = 9e-24 Identities = 292/438 (67%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || ||| | ||||| || ||||||||||||||||||| ||||| ||| | | || Sbjct 1053414 CGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATC 1053355 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| Sbjct 1053354 TTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCC 1053295 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 102362 ||||||||||| | ||| || || || || ||| | | | || Sbjct 1053294 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAG 1053235 Query 102363 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTC 102422 || | | ||| || | |||| | | |||||||| ||||||||| ||| ||| Sbjct 1053234 CCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTC 1053175 Query 102423 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATAT 102482 | || || || ||||||||||| |||| ||||| || |||| | |||| Sbjct 1053174 TTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATAC 1053115 Query 102483 ATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTC 102541 || |||| || |||| | || || | || || | || | | | || | Sbjct 1053114 ATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGC 1053056 Query 102542 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 102601 || || || || |||||||||||||||||| || | || ||||| ||||||||||| Sbjct 1053055 CACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGA 1052996 Query 102602 AAAGAGGGTTGGGGACTA 102619 ||| | || || ||||| Sbjct 1052995 GAAGCGCGTCGGCGACTA 1052978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741189552320