Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq15 192 7e-44
seq31 86.0 7e-12
seq22 86.0 7e-12
seq13 86.0 7e-12
seq12 86.0 7e-12
>seq15
Length=714589
Score = 192 bits (212), Expect = 7e-44
Identities = 1107/1756 (63%), Gaps = 61/1756 (3%)
Strand=Plus/Plus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466
|| ||||| ||||| || || ||||||||||||||||| || || | ||||| ||||
Sbjct 177279 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 177337
Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526
|| ||| | || || || ||| | ||||| |||||||||||| || || ||
Sbjct 177338 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATAAA 177397
Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCCCAGACAGT 109583
|||||| ||||| ||||| || ||||| | || | || | || |||||||| ||
Sbjct 177398 AGCACCACGGTCAGCGGCCATCTCAATGATTC---TTCGCTGCGAGATCTCCCAGACGGT 177454
Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643
|||||| | |||| | || || || |||| || | ||| || || ||| |
Sbjct 177455 CTTGTAAAGTGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATCGAACCTCCATC 177514
Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC--- 109700
| || | | |||||| | | ||||| ||||| | | | || | |||
Sbjct 177515 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCA---TGTCGACAAGGTCCTT 177571
Query 109701 -AACAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758
| ||| ||| |||||| || || |||||||| || || ||| ||||||
Sbjct 177572 GAGCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATG 177629
Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818
|| | ||||| || ||||| ||||| |||||||| || || |||| |||||| || ||
Sbjct 177630 TTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTT 177689
Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878
|||||||| || ||||| || ||| || | ||| | ||||| ||| |
Sbjct 177690 GGCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGT------------GCTCA-GCAAT 177736
Query 109879 GCGTCCCAATCATA-ACGACCACTA----AATTTAGT---CTCACCATCCCACATATCTG 109930
| || | ||| | ||| ||| | | | ||| | ||| |||||||||
Sbjct 177737 -CTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATTCCACATATCGT 177795
Query 109931 GTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCT 109990
|| || | ||||| | | ||||| || | | | ||| ||| | || |||
Sbjct 177796 ACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCT 177855
Query 109991 CGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCAT 110050
|| | ||| |||| | || || ||||| || || |||||||| || || |
Sbjct 177856 TTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGT 177915
Query 110051 TCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTA 110110
| | || || || | ||||| ||||| | | || |||| || |
Sbjct 177916 TGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAA 177975
Query 110111 GACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTA 110170
|||| |||||||| | ||| ||||| || || | ||| ||| || || ||| |
Sbjct 177976 GACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGA 178035
Query 110171 CGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTT 110230
| ||||| |||| ||||||| | || | || || ||| | |||| ||
Sbjct 178036 CAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTT 178095
Query 110231 CATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAA 110290
| ||||| || | | | || ||| | || | | |||| | || || ||||
Sbjct 178096 CGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAA 178155
Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350
||| || | ||||| || | ||| || | ||||| |||| ||| || || |
Sbjct 178156 GAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGC 178215
Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410
|||||||||| || ||| ||| | ||||||||| || ||| |||||| || |
Sbjct 178216 ACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGT 178275
Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470
|||| || ||||| | ||| ||||||| || ||||| | || |||||||| | ||| |
Sbjct 178276 CCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAA 178335
Query 110471 CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTC-----CTCGTACTTGGTGTA 110525
| ||| | ||||| || || | |||| || |||||| | |||
Sbjct 178336 GCTTTTGTGCGCGAACAGTCTCG----CG-GCCCTTGTTCTGCTTCTCGTAGCTCTCGTA 178390
Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585
|| | |||| ||||| | ||||| ||||| | || || || || || || |
Sbjct 178391 CAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACAT 178450
Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645
||| | ||| || || || | || | ||||||||| |||||||||||||||| ||
Sbjct 178451 GAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGC 178510
Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705
|||| || || || || |||| || | || ||||| ||| || || | ||
Sbjct 178511 GTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA 178570
Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC------CTTACG 110759
| | | || || | ||||||||| ||||| |||| |||| || || ||| |
Sbjct 178571 GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTT--G 178628
Query 110760 ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAAT 110819
| || |||||| |||||||| || ||| ||| | || | |||||| ||||| |
Sbjct 178629 TTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAG 178687
Query 110820 TCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879
|| | ||| || || || || | || || | | ||||||||| ||| |
Sbjct 178688 ACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCAC 178747
Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCAT 110938
| | |||||||| || || ||| || ||||| ||| ||||||| | |
Sbjct 178748 GTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT-TGAGTGTGTCGT 178806
Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998
|||| || || || || |||| || | || || ||||| || ||||| || ||
Sbjct 178807 AAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTG 178866
Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCT 111058
|| || ||||| ||||| | || || | || || |||| ||| ||||| |
Sbjct 178867 ATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGT 178926
Query 111059 TGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCA 111118
|| ||| || |||| || | || | ||||||||| |||| ||||| ||||
Sbjct 178927 AGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCA 178986
Query 111119 TGAACATATATTGAGG 111134
||| ||| | ||| ||
Sbjct 178987 TGAGCATGTGTTGTGG 179002
Score = 111 bits (122), Expect = 2e-19
Identities = 274/408 (67%), Gaps = 11/408 (3%)
Strand=Plus/Plus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
|||||||| || || | | || || | || |||| |||| ||||| ||| | ||
Sbjct 509367 TCGAAACGGCCGGGTCTCATGAGCGCCTTGTCCAGAACATCGGGTCGGTTAGTACCAGCC 509426
Query 11566 ATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| || || | ||| ||||| ||| ||| |||||||| ||||| |||| |||||||
Sbjct 509427 AGAACGACGACTTGCTCAGTCG---TGTTGAATCCGTCCATCTCTGTTAGAATCTGGTTG 509483
Query 11623 ATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGC--CGAACGCTTCTTACCG 11679
| || || |||||||||||| | | | |||| ||| || ||||
Sbjct 509484 AGAGTTGCCTCTCGCTCATCGTTGCCACCACCGAAGTTCTGCTTCGATCGGGCACGACCG 509543
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
| |||||||||||| || ||||| | ||| || || | | || || | ||||
Sbjct 509544 ATAGCGTCAATCTCGTCAATGAAGATGATGCAGGGCGTGCTCTTGCGCGCATTGGCGAAC 509603
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA- 11798
| || || |||||| || |||||||| ||||||||||| ||||| | | ||
Sbjct 509604 AAGTCTCGGACACGCGATGCACCAACACCAACGAACATCTCGACGAACTCAGAACCACTG 509663
Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858
|||||||| ||| ||||| ||||| || || | || || || |||||||||||
Sbjct 509664 ACACTGAA-GAAAGGAACGCCTGACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACC 509722
Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
||||| || | |||| || | || || || |||||||| |||||
Sbjct 509723 AGTACCTGGGGATCCAGATAGGATAGCACCGCGAGGGATCTTCGCACC 509770
>seq31
Length=259540
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 84842 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 84783
Query 136777 GGGAACA 136783
| || ||
Sbjct 84782 GTGACCA 84776
>seq22
Length=447562
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 135954 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 136013
Query 136777 GGGAACA 136783
| || ||
Sbjct 136014 GTGACCA 136020
>seq13
Length=849037
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 712850 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 712791
Query 136777 GGGAACA 136783
| || ||
Sbjct 712790 GTGACCA 712784
>seq12
Length=1028461
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 74280 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 74221
Query 136777 GGGAACA 136783
| || ||
Sbjct 74220 GTGACCA 74214
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 408915 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 408974
Query 136777 GGGAACA 136783
| || ||
Sbjct 408975 GTGACCA 408981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588974851496800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |