Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq15 192 7e-44 seq31 86.0 7e-12 seq22 86.0 7e-12 seq13 86.0 7e-12 seq12 86.0 7e-12 >seq15 Length=714589 Score = 192 bits (212), Expect = 7e-44 Identities = 1107/1756 (63%), Gaps = 61/1756 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 || ||||| ||||| || || ||||||||||||||||| || || | ||||| |||| Sbjct 177279 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 177337 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||||| |||||||||||| || || || Sbjct 177338 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATAAA 177397 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCCCAGACAGT 109583 |||||| ||||| ||||| || ||||| | || | || | || |||||||| || Sbjct 177398 AGCACCACGGTCAGCGGCCATCTCAATGATTC---TTCGCTGCGAGATCTCCCAGACGGT 177454 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | |||| | || || || |||| || | ||| || || ||| | Sbjct 177455 CTTGTAAAGTGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATCGAACCTCCATC 177514 Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC--- 109700 | || | | |||||| | | ||||| ||||| | | | || | ||| Sbjct 177515 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCA---TGTCGACAAGGTCCTT 177571 Query 109701 -AACAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 | ||| ||| |||||| || || |||||||| || || ||| |||||| Sbjct 177572 GAGCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATG 177629 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | ||||| || ||||| ||||| |||||||| || || |||| |||||| || || Sbjct 177630 TTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTT 177689 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878 |||||||| || ||||| || ||| || | ||| | ||||| ||| | Sbjct 177690 GGCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGT------------GCTCA-GCAAT 177736 Query 109879 GCGTCCCAATCATA-ACGACCACTA----AATTTAGT---CTCACCATCCCACATATCTG 109930 | || | ||| | ||| ||| | | | ||| | ||| ||||||||| Sbjct 177737 -CTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATTCCACATATCGT 177795 Query 109931 GTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCT 109990 || || | ||||| | | ||||| || | | | ||| ||| | || ||| Sbjct 177796 ACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCT 177855 Query 109991 CGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCAT 110050 || | ||| |||| | || || ||||| || || |||||||| || || | Sbjct 177856 TTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGT 177915 Query 110051 TCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTA 110110 | | || || || | ||||| ||||| | | || |||| || | Sbjct 177916 TGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAA 177975 Query 110111 GACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTA 110170 |||| |||||||| | ||| ||||| || || | ||| ||| || || ||| | Sbjct 177976 GACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGA 178035 Query 110171 CGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTT 110230 | ||||| |||| ||||||| | || | || || ||| | |||| || Sbjct 178036 CAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTT 178095 Query 110231 CATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAA 110290 | ||||| || | | | || ||| | || | | |||| | || || |||| Sbjct 178096 CGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAA 178155 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| || | ||||| || | ||| || | ||||| |||| ||| || || | Sbjct 178156 GAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGC 178215 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 |||||||||| || ||| ||| | ||||||||| || ||| |||||| || | Sbjct 178216 ACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGT 178275 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| || ||||| | ||| ||||||| || ||||| | || |||||||| | ||| | Sbjct 178276 CCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAA 178335 Query 110471 CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTC-----CTCGTACTTGGTGTA 110525 | ||| | ||||| || || | |||| || |||||| | ||| Sbjct 178336 GCTTTTGTGCGCGAACAGTCTCG----CG-GCCCTTGTTCTGCTTCTCGTAGCTCTCGTA 178390 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 || | |||| ||||| | ||||| ||||| | || || || || || || | Sbjct 178391 CAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACAT 178450 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 ||| | ||| || || || | || | ||||||||| |||||||||||||||| || Sbjct 178451 GAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGC 178510 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 |||| || || || || |||| || | || ||||| ||| || || | || Sbjct 178511 GTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA 178570 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC------CTTACG 110759 | | | || || | ||||||||| ||||| |||| |||| || || ||| | Sbjct 178571 GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTT--G 178628 Query 110760 ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAAT 110819 | || |||||| |||||||| || ||| ||| | || | |||||| ||||| | Sbjct 178629 TTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAG 178687 Query 110820 TCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879 || | ||| || || || || | || || | | ||||||||| ||| | Sbjct 178688 ACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCAC 178747 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCAT 110938 | | |||||||| || || ||| || ||||| ||| ||||||| | | Sbjct 178748 GTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT-TGAGTGTGTCGT 178806 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 |||| || || || || |||| || | || || ||||| || ||||| || || Sbjct 178807 AAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTG 178866 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCT 111058 || || ||||| ||||| | || || | || || |||| ||| ||||| | Sbjct 178867 ATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGT 178926 Query 111059 TGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCA 111118 || ||| || |||| || | || | ||||||||| |||| ||||| |||| Sbjct 178927 AGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCA 178986 Query 111119 TGAACATATATTGAGG 111134 ||| ||| | ||| || Sbjct 178987 TGAGCATGTGTTGTGG 179002 Score = 111 bits (122), Expect = 2e-19 Identities = 274/408 (67%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || | | || || | || |||| |||| ||||| ||| | || Sbjct 509367 TCGAAACGGCCGGGTCTCATGAGCGCCTTGTCCAGAACATCGGGTCGGTTAGTACCAGCC 509426 Query 11566 ATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | ||| ||||| ||| ||| |||||||| ||||| |||| ||||||| Sbjct 509427 AGAACGACGACTTGCTCAGTCG---TGTTGAATCCGTCCATCTCTGTTAGAATCTGGTTG 509483 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGC--CGAACGCTTCTTACCG 11679 | || || |||||||||||| | | | |||| ||| || |||| Sbjct 509484 AGAGTTGCCTCTCGCTCATCGTTGCCACCACCGAAGTTCTGCTTCGATCGGGCACGACCG 509543 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | |||||||||||| || ||||| | ||| || || | | || || | |||| Sbjct 509544 ATAGCGTCAATCTCGTCAATGAAGATGATGCAGGGCGTGCTCTTGCGCGCATTGGCGAAC 509603 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA- 11798 | || || |||||| || |||||||| ||||||||||| ||||| | | || Sbjct 509604 AAGTCTCGGACACGCGATGCACCAACACCAACGAACATCTCGACGAACTCAGAACCACTG 509663 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 |||||||| ||| ||||| ||||| || || | || || || ||||||||||| Sbjct 509664 ACACTGAA-GAAAGGAACGCCTGACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACC 509722 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| || | |||| || | || || || |||||||| ||||| Sbjct 509723 AGTACCTGGGGATCCAGATAGGATAGCACCGCGAGGGATCTTCGCACC 509770 >seq31 Length=259540 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 84842 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 84783 Query 136777 GGGAACA 136783 | || || Sbjct 84782 GTGACCA 84776 >seq22 Length=447562 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 135954 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 136013 Query 136777 GGGAACA 136783 | || || Sbjct 136014 GTGACCA 136020 >seq13 Length=849037 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 712850 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 712791 Query 136777 GGGAACA 136783 | || || Sbjct 712790 GTGACCA 712784 >seq12 Length=1028461 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 74280 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 74221 Query 136777 GGGAACA 136783 | || || Sbjct 74220 GTGACCA 74214 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 408915 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 408974 Query 136777 GGGAACA 136783 | || || Sbjct 408975 GTGACCA 408981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974851496800