Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq15 275 7e-69
seq4 107 2e-18
>seq15
Length=714589
Score = 275 bits (304), Expect = 7e-69
Identities = 1119/1740 (64%), Gaps = 35/1740 (2%)
Strand=Plus/Plus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGA 105648
|||||||||||||| || |||||||| || ||||| || || | ||||||||||
Sbjct 177279 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 177337
Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708
|| |||| ||| || || | |||| | |||| ||| ||||||||| ||
Sbjct 177338 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATAAA 177397
Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTGATTTCCCACACTGTG 105766
|||||| | || ||||| ||||||| | |||| | ||| ||||| || ||
Sbjct 177398 AGCACCACGGTCAGCGGCCATCTCAATGA--TTCTTCGCTGCGAGATCTCCCAGACGGTC 177455
Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTG--AATTGAACCCCCCG 105824
||| || |||| | || || ||||| | || || || || ||| ||||| ||
Sbjct 177456 TTGTAAAGTGTCTTTGTCTCCTCAGGGATGT-TGGGA-ATCCTGGCAATCGAACCTCCAT 177513
Query 105825 CCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGA 105884
| || || | | |||||| | || ||||| ||||| || | || || ||||
Sbjct 177514 CGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGA 177573
Query 105885 CGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTT 105942
| ||| |||||||| | ||||| || |||||| | | |||||||||
Sbjct 177574 GCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTT 177631
Query 105943 CGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 106002
| ||||| || || ||||| || || || |||| || |||| |||||||| |||||
Sbjct 177632 GGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGG 177691
Query 106003 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAAC 106062
||| ||||| || | || ||| || | ||| | || || ||||| |||
Sbjct 177692 CATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGA 177751
Query 106063 ATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCT 106120
||||||| || | || | || | || |||| ||||||| | || || | ||
Sbjct 177752 CGCCCAGTCCCAGAGGTCAG-TAGGCGTGACATTCC-ACATATCGTACTGGAGGATACCC 177809
Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 106180
||||| |||||| || || | |||| || | ||| | | | || | || ||
Sbjct 177810 TGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTGCGATGTCGCAT 177869
Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240
| || | || || || ||||| |||||||| | || | || ||| |||
Sbjct 177870 GAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCT 177929
Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 106300
|| ||||| || || | |||| | || |||| || |||||||||||||||
Sbjct 177930 TCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCC 177989
Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360
| ||| || |||| ||| || | || || || || || || || ||
Sbjct 177990 ATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTG 178049
Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420
|| |||| ||| | || ||| |||| | ||||| ||| || || || |
Sbjct 178050 ACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTG 178109
Query 106421 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 106480
| ||||| | | || | | |||| | || ||||| | || ||||| |||
Sbjct 178110 AAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTG 178169
Query 106481 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC 106540
||||| || |||||| | | |||||||| | ||| || || ||||||||||| ||
Sbjct 178170 CAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTG 178229
Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600
|| || || | ||||| ||||| ||||| |||||| || |||||||| |||||
Sbjct 178230 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATA 178289
Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGT 106660
|||| | || ||||| ||||| | || ||||| || | ||| | | || |
Sbjct 178290 AAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGA 178349
Query 106661 ACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 106719
||| | || ||||| | || | |||||| | ||| ||||| || || || ||
Sbjct 178350 ACAGTCTCG-CGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTC 178408
Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779
||| | |||| ||| || || || || || || | || | ||| | ||
Sbjct 178409 ACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTT 178468
Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 106839
|| | || ||||||||||| ||||| ||||||||||||| | |||||||| | |
Sbjct 178469 GTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGC 178528
Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899
|| |||| || | || ||||| || | |||||||| | | || || |||||
Sbjct 178529 GCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTG 178588
Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953
||||||||| || |||| |||| | || | | ||| ||| | || | ||
Sbjct 178589 CCATGGCTCGAGGTAGATGGCGAAGGCACC---TGGGCGCTTGTTGCCACCCTGGTCGAC 178645
Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013
|||||| || ||| ||| |||| || ||||| ||||| | ||| | ||| || ||
Sbjct 178646 ATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTT 178705
Query 107014 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071
|| || |||| || ||| | | || | | || | || | ||||||||
Sbjct 178706 AGTGCCACCGATGTATGAG--CCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCG 178763
Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131
||||| ||| ||||| |||||| | | || || | || || |||| ||| |
Sbjct 178764 CCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTG 178823
Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191
|||||||| || |||| |||||||| ||||| || ||| |||||| || || |||
Sbjct 178824 TCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTG 178883
Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 107250
|| | || || | ||||| |||| ||| ||| ||||| | |||||| ||||| |
Sbjct 178884 AACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGAT 178942
Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310
| | |||||||| || ||||| ||||| | || |||||||| | ||||| ||| ||
Sbjct 178943 GGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002
>seq4
Length=2069545
Score = 107 bits (118), Expect = 2e-18
Identities = 299/454 (66%), Gaps = 16/454 (4%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| || || |||||||| |||||||||||||| ||| | || |||||| |||||
Sbjct 1052978 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTCCATG 1053037
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACC---CCAACTTGTTTGAG 117098
||||| || || || | |||| | | || || || ||||| ||
Sbjct 1053038 AAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC-------AG 1053090
Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158
||||| || | || |||| ||||| | | |||| || |||||| |||| ||
Sbjct 1053091 CAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAG 1053150
Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218
| ||||| |||||||| | |||| | | ||||||||| || || || | | |||
Sbjct 1053151 AGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGAT 1053210
Query 117219 GGCGTGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGAGCTCCACGGCAA 117277
|| || || || | |||| | || || || |||||| ||| |
Sbjct 1053211 AGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGA-GAAGAGAAGGCAGGCGA 1053269
Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337
| || ||| | ||||| || ||||| || || || || ||||| ||| || ||||
Sbjct 1053270 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCA 1053329
Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397
| ||||| |||||||| | ||| | || | | ||| || ||| ||||||||||||||
Sbjct 1053330 TCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCT 1053389
Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
| ||| || || |||| ||||| | ||||||
Sbjct 1053390 CAACAGCGGCGAATGCAACGAGGCGGTTGGCGAA 1053423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589979649537440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |