Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq15 275 7e-69 seq4 107 2e-18 >seq15 Length=714589 Score = 275 bits (304), Expect = 7e-69 Identities = 1119/1740 (64%), Gaps = 35/1740 (2%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGA 105648 |||||||||||||| || |||||||| || ||||| || || | |||||||||| Sbjct 177279 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 177337 Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708 || |||| ||| || || | |||| | |||| ||| ||||||||| || Sbjct 177338 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATAAA 177397 Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTGATTTCCCACACTGTG 105766 |||||| | || ||||| ||||||| | |||| | ||| ||||| || || Sbjct 177398 AGCACCACGGTCAGCGGCCATCTCAATGA--TTCTTCGCTGCGAGATCTCCCAGACGGTC 177455 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTG--AATTGAACCCCCCG 105824 ||| || |||| | || || ||||| | || || || || ||| ||||| || Sbjct 177456 TTGTAAAGTGTCTTTGTCTCCTCAGGGATGT-TGGGA-ATCCTGGCAATCGAACCTCCAT 177513 Query 105825 CCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGA 105884 | || || | | |||||| | || ||||| ||||| || | || || |||| Sbjct 177514 CGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGA 177573 Query 105885 CGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTT 105942 | ||| |||||||| | ||||| || |||||| | | ||||||||| Sbjct 177574 GCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTT 177631 Query 105943 CGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 106002 | ||||| || || ||||| || || || |||| || |||| |||||||| ||||| Sbjct 177632 GGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGG 177691 Query 106003 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAAC 106062 ||| ||||| || | || ||| || | ||| | || || ||||| ||| Sbjct 177692 CATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGA 177751 Query 106063 ATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCT 106120 ||||||| || | || | || | || |||| ||||||| | || || | || Sbjct 177752 CGCCCAGTCCCAGAGGTCAG-TAGGCGTGACATTCC-ACATATCGTACTGGAGGATACCC 177809 Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 106180 ||||| |||||| || || | |||| || | ||| | | | || | || || Sbjct 177810 TGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTGCGATGTCGCAT 177869 Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240 | || | || || || ||||| |||||||| | || | || ||| ||| Sbjct 177870 GAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCT 177929 Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 106300 || ||||| || || | |||| | || |||| || ||||||||||||||| Sbjct 177930 TCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCC 177989 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360 | ||| || |||| ||| || | || || || || || || || || Sbjct 177990 ATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTG 178049 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 || |||| ||| | || ||| |||| | ||||| ||| || || || | Sbjct 178050 ACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTG 178109 Query 106421 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 106480 | ||||| | | || | | |||| | || ||||| | || ||||| ||| Sbjct 178110 AAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTG 178169 Query 106481 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC 106540 ||||| || |||||| | | |||||||| | ||| || || ||||||||||| || Sbjct 178170 CAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTG 178229 Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600 || || || | ||||| ||||| ||||| |||||| || |||||||| ||||| Sbjct 178230 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATA 178289 Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGT 106660 |||| | || ||||| ||||| | || ||||| || | ||| | | || | Sbjct 178290 AAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGA 178349 Query 106661 ACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 106719 ||| | || ||||| | || | |||||| | ||| ||||| || || || || Sbjct 178350 ACAGTCTCG-CGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTC 178408 Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779 ||| | |||| ||| || || || || || || | || | ||| | || Sbjct 178409 ACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTT 178468 Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 106839 || | || ||||||||||| ||||| ||||||||||||| | |||||||| | | Sbjct 178469 GTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGC 178528 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 || |||| || | || ||||| || | |||||||| | | || || ||||| Sbjct 178529 GCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTG 178588 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953 ||||||||| || |||| |||| | || | | ||| ||| | || | || Sbjct 178589 CCATGGCTCGAGGTAGATGGCGAAGGCACC---TGGGCGCTTGTTGCCACCCTGGTCGAC 178645 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 |||||| || ||| ||| |||| || ||||| ||||| | ||| | ||| || || Sbjct 178646 ATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTT 178705 Query 107014 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || |||| || ||| | | || | | || | || | |||||||| Sbjct 178706 AGTGCCACCGATGTATGAG--CCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCG 178763 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 ||||| ||| ||||| |||||| | | || || | || || |||| ||| | Sbjct 178764 CCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTG 178823 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 |||||||| || |||| |||||||| ||||| || ||| |||||| || || ||| Sbjct 178824 TCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTG 178883 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 107250 || | || || | ||||| |||| ||| ||| ||||| | |||||| ||||| | Sbjct 178884 AACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGAT 178942 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | | |||||||| || ||||| ||||| | || |||||||| | ||||| ||| || Sbjct 178943 GGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002 >seq4 Length=2069545 Score = 107 bits (118), Expect = 2e-18 Identities = 299/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| ||| | || |||||| ||||| Sbjct 1052978 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTCCATG 1053037 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACC---CCAACTTGTTTGAG 117098 ||||| || || || | |||| | | || || || ||||| || Sbjct 1053038 AAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC-------AG 1053090 Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158 ||||| || | || |||| ||||| | | |||| || |||||| |||| || Sbjct 1053091 CAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAG 1053150 Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218 | ||||| |||||||| | |||| | | ||||||||| || || || | | ||| Sbjct 1053151 AGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGAT 1053210 Query 117219 GGCGTGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 || || || || | |||| | || || || |||||| ||| | Sbjct 1053211 AGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGA-GAAGAGAAGGCAGGCGA 1053269 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| | ||||| || ||||| || || || || ||||| ||| || |||| Sbjct 1053270 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCA 1053329 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | ||||| |||||||| | ||| | || | | ||| || ||| |||||||||||||| Sbjct 1053330 TCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCT 1053389 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 | ||| || || |||| ||||| | |||||| Sbjct 1053390 CAACAGCGGCGAATGCAACGAGGCGGTTGGCGAA 1053423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979649537440