Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq15 309 6e-79
seq4 275 1e-68
>seq15
Length=714589
Score = 309 bits (342), Expect = 6e-79
Identities = 1045/1605 (65%), Gaps = 62/1605 (4%)
Strand=Plus/Plus
Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCC--CCAGCCGTGCA 212634
|||||| |||| || |||||||||||||| ||||| || || ||| |||||| |
Sbjct 177267 GCAGCCATGGTACGGAGATAGTACATGCCAGTCTTGAGACCA--GCCTTCCAGCCAGCAA 177324
Query 212635 TGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTA 212694
|||||| | |||| |||| | || || || | || || || |
Sbjct 177325 AGTGCATAGAAGTGA---TCTTGCCCATAGTAGGCTCCT-----TCATG-------TGGA 177369
Query 212695 GGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATAT 212754
|||||| |||||| |||||| || || | | | |||||||||||| || |||||
Sbjct 177370 TGTTCAGCGACTGAGACTGGTCAATAAAAGCACCACGGTCAGCGGCCATCTCAATGATTC 177429
Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT-TCTTTGAGGTCCTCTGGGAAGCCG 212813
|| ||| |||| |||||| ||||||||| | | | |||||| ||||| |||| | |
Sbjct 177430 TTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGTGTCTTTGTC-TCCTCAGGGATGTTG 177488
Query 212814 GGGATGTTCTGCA--CAGACCCCCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTT 212869
|| || | ||| | ||| || | ||| | | | | ||||| |||
Sbjct 177489 GGAATCCTG-GCAATCGAACCTCCATCGGCGATGATACGGTTCTT---CATGTTCTCAGA 177544
Query 212870 CCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929
||| || ||| || | ||| ||||| || |||||||| | |||||| |||||
Sbjct 177545 CCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACC 177604
Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989
| ||| || | | || | ||| || ||||| ||||||| || ||||||||| ||
Sbjct 177605 AGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCC 177664
Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049
||||||||||| |||| ||| || |||||||| || | || || ||| | ||| ||
Sbjct 177665 CAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGCACACC 177724
Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109
|||||| | || | || ||||||||||| | ||| |||
Sbjct 177725 GTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGT-AGG-------- 177775
Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169
| | || |||||||| || |||| | ||| || | | ||||| || | ||| |
Sbjct 177776 CGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGT 177835
Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229
||| || ||| ||||||| || | ||||| || | || ||||| | ||||||
Sbjct 177836 CTTGTAAGGACCAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGAT 177895
Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA- 213288
||| ||||| || | ||||||||||||| || || ||| ||| || | |
Sbjct 177896 GGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAG 177955
Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348
|||| |||| ||||||| || || || || || || |||||||||| ||| | | ||
Sbjct 177956 TGCGA-GGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGT 178014
Query 213349 TAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407
| | | || ||| || | ||||| |||| |||||||||||||| | ||||
Sbjct 178015 TGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTG 178073
Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467
|||||| | |||| ||||| | | || | || | | ||||| | || ||
Sbjct 178074 CGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAG 178133
Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527
| ||||| ||||||||| | |||| |||||||||||| ||||| | || |
Sbjct 178134 TCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCA 178193
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| ||||| ||||||| |||| || |||||||| || ||||||| |||
Sbjct 178194 GTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGG 178253
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| |||| || |||||||| ||||| ||||| || ||||| |||
Sbjct 178254 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGC 178313
Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707
| | | || || | ||| || | || | || || | || | || || |
Sbjct 178314 GCCTCAAGAATGGCGTACCAAAGCT-TTTGTGCGCGAACA---GTCTCGCGGC-CCTTGT 178368
Query 213708 GTAGC--CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTC 213765
|| |||||| ||||| || | | |||||| | || |||| | | || |
Sbjct 178369 TCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGC 178428
Query 213766 CCGGACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATG 213824
| || || | |||| |||||||| |||||| |||| ||| ||| | || ||||
Sbjct 178429 CAGGGCACTCGTTCGGG-CACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATG 178487
Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884
|| ||||| || | |||||| ||| ||| || || | | | ||| ||| ||
Sbjct 178488 AAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCG 178547
Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944
||| |||||||| || || ||| |||||| ||| |||||||| ||||| | |||||||
Sbjct 178548 TGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATG 178607
Query 213945 GCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTT 213997
|| ||||| || | || | ||||| |||||||| | | | || | || ||||
Sbjct 178608 GCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTT 178663
Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057
| | | || || | ||| | || ||||| || |||||| || || | || || ||
Sbjct 178664 GTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGA 178723
Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117
||| | || | | | | || | ||| || || || || ||| |||||||||||
Sbjct 178724 GCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAA 178783
Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162
|| ||| | | | || || |||||| | |||||||| ||
Sbjct 178784 CGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 178828
>seq4
Length=2069545
Score = 275 bits (304), Expect = 1e-68
Identities = 578/851 (68%), Gaps = 28/851 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || || | ||||| |||||||| ||||| || ||| || ||||||||
Sbjct 1052974 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 1053033
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTC 47952
||||||| ||||||||||| | || || ||| ||| | ||| ||| |
Sbjct 1053034 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC----- 1053088
Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012
||||| | || |||||| |||||||||||| ||||||| || ||||||||| |
Sbjct 1053089 -AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAG 1053147
Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072
|| | || | || | | | ||||||| ||| |||| |||||||| |
Sbjct 1053148 CAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGAT 1053207
Query 48073 AATCTGCT-TAACGCGGGACTCTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCA 48128
|| ||| | || ||||||| | || ||||| ||| | | |||| |
Sbjct 1053208 GATA-GCTCTGACA---GACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGA---AGAGAA 1053260
Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188
|||||| ||||| |||||| ||| ||||| ||| ||||||| |||||||||| |
Sbjct 1053261 GGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTA 1053320
Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248
|||| ||||| | || | || ||||||||||| || | |||||||| || |||||
Sbjct 1053321 GACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGA 1053380
Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308
|||| ||||| || || ||||| || ||| | | |||| | | ||||||||| |
Sbjct 1053381 AGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGG 1053440
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368
||||||| || |||||||| |||||||| |||||| || || | || |||||
Sbjct 1053441 AGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGT 1053500
Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTAC 48427
|||||| | | ||| || | || | ||| || || || || ||| | |||
Sbjct 1053501 TGAAGAGGTACCTGCGCT-GCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAG 1053559
Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487
|||| ||||| || ||||| || ||| ||||| ||||||||| | |||||
Sbjct 1053560 GTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGG 1053619
Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547
| || ||||| | ||||||| ||| | || ||||| ||||| || ||||| || ||
Sbjct 1053620 ATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCT 1053679
Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GC--ATTC 48604
|| |||||||| ||||| || | ||| |||||||| | | ||||| || |||
Sbjct 1053680 GCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTC 1053739
Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664
||| | || | ||| ||| ||||| | || || | |||||||| || || ||
Sbjct 1053740 CAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCC 1053799
Query 48665 TTTTTGTACAT 48675
|| ||||||||
Sbjct 1053800 TTCTTGTACAT 1053810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931530983511040
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