Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq15 309 6e-79 seq4 275 1e-68 >seq15 Length=714589 Score = 309 bits (342), Expect = 6e-79 Identities = 1045/1605 (65%), Gaps = 62/1605 (4%) Strand=Plus/Plus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCC--CCAGCCGTGCA 212634 |||||| |||| || |||||||||||||| ||||| || || ||| |||||| | Sbjct 177267 GCAGCCATGGTACGGAGATAGTACATGCCAGTCTTGAGACCA--GCCTTCCAGCCAGCAA 177324 Query 212635 TGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTA 212694 |||||| | |||| |||| | || || || | || || || | Sbjct 177325 AGTGCATAGAAGTGA---TCTTGCCCATAGTAGGCTCCT-----TCATG-------TGGA 177369 Query 212695 GGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATAT 212754 |||||| |||||| |||||| || || | | | |||||||||||| || ||||| Sbjct 177370 TGTTCAGCGACTGAGACTGGTCAATAAAAGCACCACGGTCAGCGGCCATCTCAATGATTC 177429 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT-TCTTTGAGGTCCTCTGGGAAGCCG 212813 || ||| |||| |||||| ||||||||| | | | |||||| ||||| |||| | | Sbjct 177430 TTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGTGTCTTTGTC-TCCTCAGGGATGTTG 177488 Query 212814 GGGATGTTCTGCA--CAGACCCCCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTT 212869 || || | ||| | ||| || | ||| | | | | ||||| ||| Sbjct 177489 GGAATCCTG-GCAATCGAACCTCCATCGGCGATGATACGGTTCTT---CATGTTCTCAGA 177544 Query 212870 CCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929 ||| || ||| || | ||| ||||| || |||||||| | |||||| ||||| Sbjct 177545 CCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACC 177604 Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989 | ||| || | | || | ||| || ||||| ||||||| || ||||||||| || Sbjct 177605 AGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCC 177664 Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 ||||||||||| |||| ||| || |||||||| || | || || ||| | ||| || Sbjct 177665 CAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGCACACC 177724 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 |||||| | || | || ||||||||||| | ||| ||| Sbjct 177725 GTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGT-AGG-------- 177775 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 | | || |||||||| || |||| | ||| || | | ||||| || | ||| | Sbjct 177776 CGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGT 177835 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||| || ||| ||||||| || | ||||| || | || ||||| | |||||| Sbjct 177836 CTTGTAAGGACCAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGAT 177895 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA- 213288 ||| ||||| || | ||||||||||||| || || ||| ||| || | | Sbjct 177896 GGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAG 177955 Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348 |||| |||| ||||||| || || || || || || |||||||||| ||| | | || Sbjct 177956 TGCGA-GGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGT 178014 Query 213349 TAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 | | | || ||| || | ||||| |||| |||||||||||||| | |||| Sbjct 178015 TGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTG 178073 Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467 |||||| | |||| ||||| | | || | || | | ||||| | || || Sbjct 178074 CGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAG 178133 Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527 | ||||| ||||||||| | |||| |||||||||||| ||||| | || | Sbjct 178134 TCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCA 178193 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||||| |||| || |||||||| || ||||||| ||| Sbjct 178194 GTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGG 178253 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||| ||||| ||||| || ||||| ||| Sbjct 178254 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGC 178313 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 | | | || || | ||| || | || | || || | || | || || | Sbjct 178314 GCCTCAAGAATGGCGTACCAAAGCT-TTTGTGCGCGAACA---GTCTCGCGGC-CCTTGT 178368 Query 213708 GTAGC--CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTC 213765 || |||||| ||||| || | | |||||| | || |||| | | || | Sbjct 178369 TCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGC 178428 Query 213766 CCGGACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATG 213824 | || || | |||| |||||||| |||||| |||| ||| ||| | || |||| Sbjct 178429 CAGGGCACTCGTTCGGG-CACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATG 178487 Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884 || ||||| || | |||||| ||| ||| || || | | | ||| ||| || Sbjct 178488 AAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCG 178547 Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944 ||| |||||||| || || ||| |||||| ||| |||||||| ||||| | ||||||| Sbjct 178548 TGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATG 178607 Query 213945 GCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTT 213997 || ||||| || | || | ||||| |||||||| | | | || | || |||| Sbjct 178608 GCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTT 178663 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 | | | || || | ||| | || ||||| || |||||| || || | || || || Sbjct 178664 GTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGA 178723 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 ||| | || | | | | || | ||| || || || || ||| ||||||||||| Sbjct 178724 GCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAA 178783 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 || ||| | | | || || |||||| | |||||||| || Sbjct 178784 CGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 178828 >seq4 Length=2069545 Score = 275 bits (304), Expect = 1e-68 Identities = 578/851 (68%), Gaps = 28/851 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || ||| || |||||||| Sbjct 1052974 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 1053033 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTC 47952 ||||||| ||||||||||| | || || ||| ||| | ||| ||| | Sbjct 1053034 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC----- 1053088 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| | || |||||| |||||||||||| ||||||| || ||||||||| | Sbjct 1053089 -AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAG 1053147 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || | || | || | | | ||||||| ||| |||| |||||||| | Sbjct 1053148 CAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGAT 1053207 Query 48073 AATCTGCT-TAACGCGGGACTCTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCA 48128 || ||| | || ||||||| | || ||||| ||| | | |||| | Sbjct 1053208 GATA-GCTCTGACA---GACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGA---AGAGAA 1053260 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||| ||||| |||||| ||| ||||| ||| ||||||| |||||||||| | Sbjct 1053261 GGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTA 1053320 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||| | || | || ||||||||||| || | |||||||| || ||||| Sbjct 1053321 GACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGA 1053380 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | | |||| | | ||||||||| | Sbjct 1053381 AGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGG 1053440 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || |||||||| |||||||| |||||| || || | || ||||| Sbjct 1053441 AGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGT 1053500 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| | | ||| || | || | ||| || || || || ||| | ||| Sbjct 1053501 TGAAGAGGTACCTGCGCT-GCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAG 1053559 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| ||||| || ||||| || ||| ||||| ||||||||| | ||||| Sbjct 1053560 GTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGG 1053619 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | || ||||| | ||||||| ||| | || ||||| ||||| || ||||| || || Sbjct 1053620 ATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCT 1053679 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GC--ATTC 48604 || |||||||| ||||| || | ||| |||||||| | | ||||| || ||| Sbjct 1053680 GCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTC 1053739 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | ||| ||| ||||| | || || | |||||||| || || || Sbjct 1053740 CAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCC 1053799 Query 48665 TTTTTGTACAT 48675 || |||||||| Sbjct 1053800 TTCTTGTACAT 1053810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530983511040