Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq4 242 7e-59
seq15 235 1e-56
>seq4
Length=2069545
Score = 242 bits (268), Expect = 7e-59
Identities = 569/855 (67%), Gaps = 26/855 (3%)
Strand=Plus/Minus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| |||||||||||||||| | || ||||||||| || ||||| || || ||
Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757
Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTA 25595
|||||| | ||| |||| || || ||| | | ||||||| || | ||| || |
Sbjct 1053756 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGC-GCTTCTTCATCTCCCA 1053698
Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655
||| | || ||||| |||||||| ||||| || || |||||||| || ||| ||||
Sbjct 1053697 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 1053638
Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715
| | || ||||| || | ||||| || |||||||||||||| || || ||
Sbjct 1053637 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 1053578
Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775
|| || ||||| ||| || | ||| | || ||||||| || ||| |
Sbjct 1053577 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA----GCCCA 1053522
Query 25776 GAGAGATCGG----CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831
|| | | || || |||||||| |||| ||| ||||| | ||||||
Sbjct 1053521 AGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCG 1053462
Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
|||||| || |||||| | | ||| | | || || | | | || || || || |
Sbjct 1053461 ACTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCAT 1053402
Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951
| || ||||| ||||| ||||| ||||||||||| || || |||||||||||||||||
Sbjct 1053401 TCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGA 1053342
Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011
|| || |||||||| || || ||||||||||||||| | | ||||||||
Sbjct 1053341 AGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCA 1053282
Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071
| |||| || || |||||||| |||| | | || | | |||| || | ||
Sbjct 1053281 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAG---AACAAGCCCAGCCCAG 1053225
Query 26072 AGACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130
|| | ||| | || |||||||| || || || ||||| ||| |||||||
Sbjct 1053224 AGTCTGTC-AGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGAC 1053166
Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190
| ||||||||| | |||||| |||||||||| ||||
Sbjct 1053165 GCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTC 1053106
Query 26191 GTGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246
|| || |||| |||||||| ||| || || || || ||||| |||| | ||
Sbjct 1053105 GTCGCTGACCGTCTGCTGTTGGCC--CTCGGCAACGTCAAGGTCTAC--CACGCCACCAA 1053050
Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306
||| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| |
Sbjct 1053049 CCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCG 1052990
Query 26307 GGTCGGCGACTATCA 26321
||||||||||| ||
Sbjct 1052989 CGTCGGCGACTACCA 1052975
>seq15
Length=714589
Score = 235 bits (260), Expect = 1e-56
Identities = 955/1479 (65%), Gaps = 53/1479 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|| || ||||| |||||||||||||||||||| ||||||| |||| || |||
Sbjct 177876 GTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCT 177935
Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|| ||| || | || || | ||| | || || || || || || || ||||||
Sbjct 177936 GACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCG 177995
Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595
||||| | ||| | |||| ||||| || ||| || || || |||||| ||
Sbjct 177996 ATGGGTCGGTGGCGGAAGTTGCT-GCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTC 178054
Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655
||| | ||||| | ||| | |||| |||| || ||| ||||||| |
Sbjct 178055 GATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCT------T 178108
Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715
||| | ||| | ||| | | || | || ||||||| ||||||| ||
Sbjct 178109 GAAGTCAAACACACCGGCCTTGTAG------TCGACAAAAGAAGGCAGGGCAAGAGAAGC 178162
Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775
|| ||| || ||||| ||||| || || |||| | ||||| || || | |||
Sbjct 178163 CAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTT 178222
Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835
| || |||||| || |||| || || || |||||| ||| ||||||||||||
Sbjct 178223 GGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTA 178282
Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895
||||||||||| |||||||| ||| ||| | ||||| || ||| || | |
Sbjct 178283 AAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTG 178342
Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAGAGC 221950
|||| || ||| | | || ||| | ||| | || || | ||| || ||
Sbjct 178343 TGCGCGAACAGTC----TCGCGGC--CCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGC 178396
Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010
| | || | ||||||||| | ||| | ||||| || ||| | || ||||| ||
Sbjct 178397 CT--CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGT 178454
Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070
|||||| |||||||| ||| | || |||||||||||| || |||||||| || |
Sbjct 178455 GTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAG 178514
Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130
|||||||| | | || ||||||| ||||| ||| || | ||| || | || ||
Sbjct 178515 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 178574
Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190
|| | |||||||||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 178575 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCA 178634
Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249
||||| || | ||| ||| | |||| | | || || | || | || |||||
Sbjct 178635 CCCTGGTCGA-CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTT 178693
Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGAC 222307
||| ||||| ||||| ||||| | || || | | | | | | |
Sbjct 178694 AGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG-- 178751
Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367
| ||| ||||| || ||| || ||||||| || ||| ||||||| ||||| |||
Sbjct 178752 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 178811
Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGT 222426
|| || || ||||||||| | || | || || || |||||||| || | | ||||
Sbjct 178812 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 178871
Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486
| | ||||| |||| ||| || ||||||||| ||||| |||||| ||
Sbjct 178872 -GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTC 178930
Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546
||| ||||| | | | | | |||| || |||||||| | || | ||||
Sbjct 178931 GTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAG 178990
Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTC 222603
||||| || || | ||| | || ||||| | || ||| || || || ||
Sbjct 178991 CATGTGTTGTGGGCGCTCGGC--GA-CCTTGCCGTTTATGCGGAGGAGATATGAACGCTC 179047
Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663
|| |||||||| |||||| | | | || ||||| | | ||| || | || | ||
Sbjct 179048 GAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 179107
Query 222664 CAGCTCCGACTT-GTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGT 222722
|||| || ||| ||| | | | | || | | | | | ||||| | | || |
Sbjct 179108 GAGCT-CGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGG--GTTG 179164
Query 222723 TCTCTTT--GGTGTCGGGGTTAACGTTGTGGTACAG--CTGCCACATGGCATCAGAGAA- 222777
||||||| | | | |||||| || | || |||||| || | ||| | ||||||
Sbjct 179165 TCTCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACA--ACGAGAGAGAAT 179222
Query 222778 CGTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATA 222837
| || | ||||||||||| ||||| || || ||||| || | || | ||| | ||
Sbjct 179223 TGCTTCTTG-GTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTA 179281
Query 222838 GTCAGGGTGCACGGTGGTCATGCTGGCTAGGGTCTGAGC 222876
||| || || |||||||||| |||| ||||| |||
Sbjct 179282 GTCGGGATGTGTGGTGGTCATGTAGGCTGCGGTCTCAGC 179320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928842988752640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |