Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 242 7e-59 seq15 235 1e-56 >seq4 Length=2069545 Score = 242 bits (268), Expect = 7e-59 Identities = 569/855 (67%), Gaps = 26/855 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || ||||||||| || ||||| || || || Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757 Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTA 25595 |||||| | ||| |||| || || ||| | | ||||||| || | ||| || | Sbjct 1053756 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGC-GCTTCTTCATCTCCCA 1053698 Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 ||| | || ||||| |||||||| ||||| || || |||||||| || ||| |||| Sbjct 1053697 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 1053638 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || ||||| || | ||||| || |||||||||||||| || || || Sbjct 1053637 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 1053578 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || || ||||| ||| || | ||| | || ||||||| || ||| | Sbjct 1053577 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA----GCCCA 1053522 Query 25776 GAGAGATCGG----CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 || | | || || |||||||| |||| ||| ||||| | |||||| Sbjct 1053521 AGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCG 1053462 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| || |||||| | | ||| | | || || | | | || || || || | Sbjct 1053461 ACTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCAT 1053402 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | || ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| Sbjct 1053401 TCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGA 1053342 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||||| || || ||||||||||||||| | | |||||||| Sbjct 1053341 AGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCA 1053282 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 | |||| || || |||||||| |||| | | || | | |||| || | || Sbjct 1053281 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAG---AACAAGCCCAGCCCAG 1053225 Query 26072 AGACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || | ||| | || |||||||| || || || ||||| ||| ||||||| Sbjct 1053224 AGTCTGTC-AGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGAC 1053166 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| | |||||| |||||||||| |||| Sbjct 1053165 GCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTC 1053106 Query 26191 GTGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246 || || |||| |||||||| ||| || || || || ||||| |||| | || Sbjct 1053105 GTCGCTGACCGTCTGCTGTTGGCC--CTCGGCAACGTCAAGGTCTAC--CACGCCACCAA 1053050 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| | Sbjct 1053049 CCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCG 1052990 Query 26307 GGTCGGCGACTATCA 26321 ||||||||||| || Sbjct 1052989 CGTCGGCGACTACCA 1052975 >seq15 Length=714589 Score = 235 bits (260), Expect = 1e-56 Identities = 955/1479 (65%), Gaps = 53/1479 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || ||||| |||||||||||||||||||| ||||||| |||| || ||| Sbjct 177876 GTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCT 177935 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| || | || || | ||| | || || || || || || || |||||| Sbjct 177936 GACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCG 177995 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||| | ||| | |||| ||||| || ||| || || || |||||| || Sbjct 177996 ATGGGTCGGTGGCGGAAGTTGCT-GCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTC 178054 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | ||| | |||| |||| || ||| ||||||| | Sbjct 178055 GATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCT------T 178108 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 ||| | ||| | ||| | | || | || ||||||| ||||||| || Sbjct 178109 GAAGTCAAACACACCGGCCTTGTAG------TCGACAAAAGAAGGCAGGGCAAGAGAAGC 178162 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 || ||| || ||||| ||||| || || |||| | ||||| || || | ||| Sbjct 178163 CAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTT 178222 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || |||||| || |||| || || || |||||| ||| |||||||||||| Sbjct 178223 GGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTA 178282 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 ||||||||||| |||||||| ||| ||| | ||||| || ||| || | | Sbjct 178283 AAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTG 178342 Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAGAGC 221950 |||| || ||| | | || ||| | ||| | || || | ||| || || Sbjct 178343 TGCGCGAACAGTC----TCGCGGC--CCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGC 178396 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | | || | ||||||||| | ||| | ||||| || ||| | || ||||| || Sbjct 178397 CT--CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGT 178454 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||||| |||||||| ||| | || |||||||||||| || |||||||| || | Sbjct 178455 GTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAG 178514 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 |||||||| | | || ||||||| ||||| ||| || | ||| || | || || Sbjct 178515 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 178574 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | |||||||||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 178575 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCA 178634 Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| || | ||| ||| | |||| | | || || | || | || ||||| Sbjct 178635 CCCTGGTCGA-CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTT 178693 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGAC 222307 ||| ||||| ||||| ||||| | || || | | | | | | | Sbjct 178694 AGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG-- 178751 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | ||| ||||| || ||| || ||||||| || ||| ||||||| ||||| ||| Sbjct 178752 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 178811 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGT 222426 || || || ||||||||| | || | || || || |||||||| || | | |||| Sbjct 178812 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 178871 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 | | ||||| |||| ||| || ||||||||| ||||| |||||| || Sbjct 178872 -GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTC 178930 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546 ||| ||||| | | | | | |||| || |||||||| | || | |||| Sbjct 178931 GTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAG 178990 Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTC 222603 ||||| || || | ||| | || ||||| | || ||| || || || || Sbjct 178991 CATGTGTTGTGGGCGCTCGGC--GA-CCTTGCCGTTTATGCGGAGGAGATATGAACGCTC 179047 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663 || |||||||| |||||| | | | || ||||| | | ||| || | || | || Sbjct 179048 GAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 179107 Query 222664 CAGCTCCGACTT-GTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGT 222722 |||| || ||| ||| | | | | || | | | | | ||||| | | || | Sbjct 179108 GAGCT-CGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGG--GTTG 179164 Query 222723 TCTCTTT--GGTGTCGGGGTTAACGTTGTGGTACAG--CTGCCACATGGCATCAGAGAA- 222777 ||||||| | | | |||||| || | || |||||| || | ||| | |||||| Sbjct 179165 TCTCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACA--ACGAGAGAGAAT 179222 Query 222778 CGTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATA 222837 | || | ||||||||||| ||||| || || ||||| || | || | ||| | || Sbjct 179223 TGCTTCTTG-GTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTA 179281 Query 222838 GTCAGGGTGCACGGTGGTCATGCTGGCTAGGGTCTGAGC 222876 ||| || || |||||||||| |||| ||||| ||| Sbjct 179282 GTCGGGATGTGTGGTGGTCATGTAGGCTGCGGTCTCAGC 179320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842988752640