Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq15 280 2e-70
seq4 107 2e-18
>seq15
Length=714589
Score = 280 bits (310), Expect = 2e-70
Identities = 1118/1737 (64%), Gaps = 27/1737 (2%)
Strand=Plus/Minus
Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270
|||||| ||||| ||||||| || || | ||||| ||||| || |||||||| |
Sbjct 179003 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATTGAGAAGGC 178944
Query 75271 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 75329
| | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | |
Sbjct 178943 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 178885
Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
|||| || || |||||| ||| || ||||| |||||||| |||| || |||||||
Sbjct 178884 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 178825
Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449
|| ||| |||| || || | || || | | |||||| ||||| ||| ||||
Sbjct 178824 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 178765
Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 75507
| |||||||| | || | || | | || | | ||| || |||| || ||
Sbjct 178764 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 178707
Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567
|| || ||| | ||| | ||||| ||||| || |||| ||| ||| || |||||
Sbjct 178706 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 178647
Query 75568 TGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGC 75623
||| | || | | ||| | || || || |||| ||||| | || |||||||
Sbjct 178646 TGTCGACCAGG-GTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGC 178588
Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683
| || || || | | |||||||| | || ||||| || | || |||| ||
Sbjct 178587 ACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCG 178528
Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743
| | |||||||| | ||||||||||||| ||||| ||||||||||| || | ||
Sbjct 178527 CTCGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACA 178468
Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803
|| | ||| | || | || || || || || || ||| |||| | ||||
Sbjct 178467 ACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTG 178408
Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863
| || || || ||||| ||| | || || || || | | | | |||||| |
Sbjct 178407 AAGAATTCGAGGCCCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCGCGAGACTGTTC 178348
Query 75864 CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923
|| | ||||| | || ||||| | | ||||| |||||||| | || | ||
Sbjct 178347 GCGCACAAAAGCTTTGGTACGCCATTCTTGAGGCGCAGACCGAGACTGGTAACCCCTTTA 178288
Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983
||||||||||||| ||||| ||| ||||| ||||| ||||| | || || ||| |
Sbjct 178287 TGCTTTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCA 178228
Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043
|||| || | ||||| || ||| | |||||||| | | |||||| || |||||||
Sbjct 178227 GCTCCAACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGTCGCCGTTTGCA 178168
Query 76044 ATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATG 76103
| ||||| || | ||||| || | |||| | | || | | ||||| |
Sbjct 178167 ACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACAAGGCCGGTGTGTTTGACTTCA 178108
Query 76104 AAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163
| || || || ||| ||||| | |||| ||| || | ||| |||| || |
Sbjct 178107 AGAAGCTCCACGAAGTCACACAAGTTGTCACCCGCAACTTGAACAAGATCATCGAAGTCA 178048
Query 76164 ATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGG 76223
| || || || || || || || | || ||| |||| || ||| |||
Sbjct 178047 ACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCGGTATGG 177988
Query 76224 GTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAG 76283
||||||||||||| || |||| || | |||| | || || ||||| ||||
Sbjct 177987 GTGTTCAAGGTCTTGCTGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAGACGAAG 177928
Query 76284 CCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTT 76343
| ||| || | || | |||||||| ||||| || || || | || | |
Sbjct 177927 CTAAGAAGCTCAACATCCAAATCTTTGAGACCATCTACCATGCTGCTCTCACTTCCTCAT 177868
Query 76344 GTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAG 76403
| || | || | | | ||| | || |||| | || || ||||||| ||||| |
Sbjct 177867 GCGACATCGCAAAGGAGCTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTATCCCAGG 177808
Query 76404 GGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGACTGGGATGT 76461
| | || |||| ||||||| |||| || | || | || | || |||||||
Sbjct 177807 GTATCCTCCAGTACGATATGT-GGAATGTCACGCCTA-CTGACCTCTGGGACTGGGCGTC 177750
Query 76462 TCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCC 76521
||| ||||| || ||| | ||| | || ||| || | || ||||| |||||
Sbjct 177749 TCTGAAGGAGAAGATTGCTGAGCACGGTGTGCGCAACTCGCTGCTCATTGCACCCATGCC 177690
Query 76522 AACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAA 76581
||| |||||||| |||| || |||| || || || ||||| || |||||||| | ||
Sbjct 177689 AACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAA 177630
Query 76582 CATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAA 76641
|||||| | | |||||| |||||||| |||||||| | ||||
Sbjct 177629 CATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAA 177570
Query 76642 TGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGG 76701
||||| | || ||||| ||||| || | |||||| | | || | | ||
Sbjct 177569 GGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATCGCCGATGG 177510
Query 76702 TGGTTCCATT--CAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACA 76759
||||| ||| || || || || | ||||| || || | |||| || ||| ||
Sbjct 177509 AGGTTCGATTGCCAGGAT-TCCCA-ACATCCCTGAGGAGACAAAGACACTTTACAAGACC 177452
Query 76760 GTGTGGGAAATCAAG-ATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCAT 76818
|| ||||| ||| | | |||| ||||||| |||||||| || |||||| || ||
Sbjct 177451 GTCTGGGAGATCTCGCAGCGAAGA-ATCATTGAGATGGCCGCTGACCGTGGTGCTTTTAT 177393
Query 76819 TGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCT 76876
||| | |||| ||| |||| | |||| | || || ||| |||| || ||
Sbjct 177392 TGACC--AGTCTCAGTCGCTGAACATCCACATGAAGGAGCCTACTATGGGCAAGATCACT 177335
Query 76877 TCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932
|||||||| | || || ||||| || ||||| || || ||||||||||||||
Sbjct 177334 TCTATGCACTTTGCTGGC-TGGAAGGCTGGTCTCAAGACTGGCATGTACTATCTCCG 177279
>seq4
Length=2069545
Score = 107 bits (118), Expect = 2e-18
Identities = 299/454 (66%), Gaps = 16/454 (4%)
Strand=Plus/Minus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|||||| | ||||| |||| || || ||| ||||||||||||||| ||| || |||
Sbjct 1053423 TTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTC 1053364
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
| | || | ||| | |||||||| ||||| ||||| || ||| ||||| || ||
Sbjct 1053363 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAG 1053304
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250
|| || ||||| || ||||| | ||| || || ||| |||||| ||
Sbjct 1053303 CTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTC-TCTCTCCT 1053245
Query 65251 CG-TAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309
|| || | |||| | || || || || ||| | | || || || ||||||||
Sbjct 1053244 CGAGAACAAGCCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGA 1053185
Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369
| | | |||| | |||||||| ||||| ||| |||| |||||| || ||
Sbjct 1053184 GCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCAT 1053125
Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG---GGTGCCAC- 65425
|| | | ||||| |||| || | || ||||| || ||||| || ||
Sbjct 1053124 GTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCT-------GTTGGCCCTCGGCAACG 1053072
Query 65426 CCA---TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGA 65482
|| | | |||| | || || || ||||| ||||| |||||| || | ||| |
Sbjct 1053071 TCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTA 1053012
Query 65483 AGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
||||||||||||| |||||||| || || |||||
Sbjct 1053011 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1052978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596568436689280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |