Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15 280 2e-70 seq4 107 2e-18 >seq15 Length=714589 Score = 280 bits (310), Expect = 2e-70 Identities = 1118/1737 (64%), Gaps = 27/1737 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 |||||| ||||| ||||||| || || | ||||| ||||| || |||||||| | Sbjct 179003 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATTGAGAAGGC 178944 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | | Sbjct 178943 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 178885 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || |||||| ||| || ||||| |||||||| |||| || ||||||| Sbjct 178884 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 178825 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || ||| |||| || || | || || | | |||||| ||||| ||| |||| Sbjct 178824 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 178765 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 75507 | |||||||| | || | || | | || | | ||| || |||| || || Sbjct 178764 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 178707 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || ||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 178706 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 178647 Query 75568 TGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 ||| | || | | ||| | || || || |||| ||||| | || ||||||| Sbjct 178646 TGTCGACCAGG-GTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGC 178588 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | || || || | | |||||||| | || ||||| || | || |||| || Sbjct 178587 ACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCG 178528 Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | | |||||||| | ||||||||||||| ||||| ||||||||||| || | || Sbjct 178527 CTCGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACA 178468 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 || | ||| | || | || || || || || || ||| |||| | |||| Sbjct 178467 ACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTG 178408 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 | || || || ||||| ||| | || || || || | | | | |||||| | Sbjct 178407 AAGAATTCGAGGCCCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCGCGAGACTGTTC 178348 Query 75864 CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 || | ||||| | || ||||| | | ||||| |||||||| | || | || Sbjct 178347 GCGCACAAAAGCTTTGGTACGCCATTCTTGAGGCGCAGACCGAGACTGGTAACCCCTTTA 178288 Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983 ||||||||||||| ||||| ||| ||||| ||||| ||||| | || || ||| | Sbjct 178287 TGCTTTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCA 178228 Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043 |||| || | ||||| || ||| | |||||||| | | |||||| || ||||||| Sbjct 178227 GCTCCAACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGTCGCCGTTTGCA 178168 Query 76044 ATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATG 76103 | ||||| || | ||||| || | |||| | | || | | ||||| | Sbjct 178167 ACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACAAGGCCGGTGTGTTTGACTTCA 178108 Query 76104 AAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163 | || || || ||| ||||| | |||| ||| || | ||| |||| || | Sbjct 178107 AGAAGCTCCACGAAGTCACACAAGTTGTCACCCGCAACTTGAACAAGATCATCGAAGTCA 178048 Query 76164 ATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGG 76223 | || || || || || || || | || ||| |||| || ||| ||| Sbjct 178047 ACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCGGTATGG 177988 Query 76224 GTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAG 76283 ||||||||||||| || |||| || | |||| | || || ||||| |||| Sbjct 177987 GTGTTCAAGGTCTTGCTGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAGACGAAG 177928 Query 76284 CCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTT 76343 | ||| || | || | |||||||| ||||| || || || | || | | Sbjct 177927 CTAAGAAGCTCAACATCCAAATCTTTGAGACCATCTACCATGCTGCTCTCACTTCCTCAT 177868 Query 76344 GTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAG 76403 | || | || | | | ||| | || |||| | || || ||||||| ||||| | Sbjct 177867 GCGACATCGCAAAGGAGCTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTATCCCAGG 177808 Query 76404 GGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGACTGGGATGT 76461 | | || |||| ||||||| |||| || | || | || | || ||||||| Sbjct 177807 GTATCCTCCAGTACGATATGT-GGAATGTCACGCCTA-CTGACCTCTGGGACTGGGCGTC 177750 Query 76462 TCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCC 76521 ||| ||||| || ||| | ||| | || ||| || | || ||||| ||||| Sbjct 177749 TCTGAAGGAGAAGATTGCTGAGCACGGTGTGCGCAACTCGCTGCTCATTGCACCCATGCC 177690 Query 76522 AACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAA 76581 ||| |||||||| |||| || |||| || || || ||||| || |||||||| | || Sbjct 177689 AACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAA 177630 Query 76582 CATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAA 76641 |||||| | | |||||| |||||||| |||||||| | |||| Sbjct 177629 CATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAA 177570 Query 76642 TGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGG 76701 ||||| | || ||||| ||||| || | |||||| | | || | | || Sbjct 177569 GGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATCGCCGATGG 177510 Query 76702 TGGTTCCATT--CAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACA 76759 ||||| ||| || || || || | ||||| || || | |||| || ||| || Sbjct 177509 AGGTTCGATTGCCAGGAT-TCCCA-ACATCCCTGAGGAGACAAAGACACTTTACAAGACC 177452 Query 76760 GTGTGGGAAATCAAG-ATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCAT 76818 || ||||| ||| | | |||| ||||||| |||||||| || |||||| || || Sbjct 177451 GTCTGGGAGATCTCGCAGCGAAGA-ATCATTGAGATGGCCGCTGACCGTGGTGCTTTTAT 177393 Query 76819 TGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCT 76876 ||| | |||| ||| |||| | |||| | || || ||| |||| || || Sbjct 177392 TGACC--AGTCTCAGTCGCTGAACATCCACATGAAGGAGCCTACTATGGGCAAGATCACT 177335 Query 76877 TCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 |||||||| | || || ||||| || ||||| || || |||||||||||||| Sbjct 177334 TCTATGCACTTTGCTGGC-TGGAAGGCTGGTCTCAAGACTGGCATGTACTATCTCCG 177279 >seq4 Length=2069545 Score = 107 bits (118), Expect = 2e-18 Identities = 299/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||||| | ||||| |||| || || ||| ||||||||||||||| ||| || ||| Sbjct 1053423 TTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTC 1053364 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | | || | ||| | |||||||| ||||| ||||| || ||| ||||| || || Sbjct 1053363 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAG 1053304 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250 || || ||||| || ||||| | ||| || || ||| |||||| || Sbjct 1053303 CTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTC-TCTCTCCT 1053245 Query 65251 CG-TAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309 || || | |||| | || || || || ||| | | || || || |||||||| Sbjct 1053244 CGAGAACAAGCCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGA 1053185 Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369 | | | |||| | |||||||| ||||| ||| |||| |||||| || || Sbjct 1053184 GCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCAT 1053125 Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG---GGTGCCAC- 65425 || | | ||||| |||| || | || ||||| || ||||| || || Sbjct 1053124 GTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCT-------GTTGGCCCTCGGCAACG 1053072 Query 65426 CCA---TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGA 65482 || | | |||| | || || || ||||| ||||| |||||| || | ||| | Sbjct 1053071 TCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTA 1053012 Query 65483 AGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||||| |||||||| || || ||||| Sbjct 1053011 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1052978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568436689280