Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq11 152 6e-31
seq15 145 9e-29
seq4 143 3e-28
seq19 95.1 1e-13
>seq11
Length=1087396
Score = 152 bits (168), Expect = 6e-31
Identities = 138/171 (81%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
||||||| || |||| ||| | ||||| ||| | || || ||| | ||||||||||
Sbjct 263700 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTTTTCGAGATTATCCTCGCCG 263758
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| ||||||||| |||| ||||| | || |||||| | || || |||||||
Sbjct 263759 CCAACTACCTGGACATCAAGGCTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGA 263818
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| ||||| |||||||| |||||||| |||||| || |||
Sbjct 263819 TCAAGGGCAAGTCACCCGATGAGATCCGTAAGACCTTCAACATCCAGAACG 263869
>seq15
Length=714589
Score = 145 bits (160), Expect = 9e-29
Identities = 212/300 (71%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| ||||| || |||| ||| | || ||||||||||| | ||| ||||| ||
Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| | | ||| | ||| | || || | |||| || | |||
Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 178756
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| ||||| || | ||||||||| | ||| || ||||| |||||||| ||||| ||
Sbjct 178757 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 178816
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| | ||| ||||| ||||| |||| || | |||||
Sbjct 178817 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 178876
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| | ||| |||| || ||||| ||| | |||||| |||||||||
Sbjct 178877 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 178936
Score = 109 bits (120), Expect = 7e-18
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507
||| ||||||||| ||||||| ||||| ||||| ||||| || ||| |||||||||
Sbjct 178484 CATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTT 178543
Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
|||||||||||| ||||| || || | | | ||| |||||||| ||||| |||||
Sbjct 178544 GCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTA 178603
Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
| ||| ||||| || ||||||| ||| ||
Sbjct 178604 GATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636
Score = 89.7 bits (98), Expect = 6e-12
Identities = 110/148 (74%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
||||||| || || || || | ||| || ||||| | ||||||||| |||| |||
Sbjct 177583 GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATG 177642
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| |||||||||| ||||| || || | ||| || |||||| | ||
Sbjct 177643 GC-TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCA 177701
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT 1627480
| ||| ||||||||||||| |||||||
Sbjct 177702 ATGAGCAGCGAGTTGCGCACACCGTGCT 177729
>seq4
Length=2069545
Score = 143 bits (158), Expect = 3e-28
Identities = 223/316 (71%), Gaps = 6/316 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| |||||| |||||| ||||||||||| || | || || ||
Sbjct 1052969 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATG 1053028
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | | |||| ||| || ||||| | |
Sbjct 1053029 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC 1053088
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1053089 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGC 1053148
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||||||| ||||| | ||| ||||||||||| || ||||
Sbjct 1053149 AGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATG 1053208
Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
|| ||| | | | | ||| ||||||||| |||| | | | |||| ||||||
Sbjct 1053209 ATAGCTCTGACAGACTC-TGGGC--TGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAG 1053265
Query 868988 GCAAAGTCGCAGTGCA 869003
|| |||||| |||||
Sbjct 1053266 GCGAAGTCGGTGTGCA 1053281
Score = 104 bits (114), Expect = 3e-16
Identities = 177/256 (69%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| | |||||| || ||| ||||| ||||| ||| | |||| | | |||
Sbjct 1053566 GAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGT 1053625
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | ||| || | | ||||||||| || ||||| ||| ||| |||||
Sbjct 1053626 ACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAG 1053685
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807
|| || |||||||| ||| ||| ||||||||| ||| |||| || | |||||
Sbjct 1053686 AAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG--ACGCTTGTTCCAGT 1053743
Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867
| ||| | |||||| | |||||| |||||||||| || ||||||||||| |
Sbjct 1053744 CGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCT 1053803
Query 869868 TGTACATCTCCCATAC 869883
||||||||| ||| ||
Sbjct 1053804 TGTACATCTGCCAGAC 1053819
Score = 91.5 bits (100), Expect = 2e-12
Identities = 196/289 (68%), Gaps = 13/289 (4%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||| | |||||| || | || |||||||| || |||||||||
Sbjct 1053284 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 1053343
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| ||||||| | |||| || ||| ||||| ||||| || ||||| ||
Sbjct 1053344 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 1053403
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356
| | ||| || | ||| || ||| ||| | ||||| |||||| || |||
Sbjct 1053404 GCAACGAGGCGGTTGGCGAA--TGTGGAG----TTCTTGTCGGAGATCCATCGCAGGGCC 1053457
Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416
||||||||||| || | | | || | ||||||||||| ||||||| |||
Sbjct 1053458 CAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGC 1053515
Query 869417 TCGGC--CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| || || || | | || |||||||| || || || ||||||||
Sbjct 1053516 GCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 1053564
Score = 86.0 bits (94), Expect = 8e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
|||||||||| || ||||| ||||| ||||| | | || ||||| | || |
Sbjct 182939 AGGACAGCATAGGTGGCACAGTGACTTGCGTCATAAGAGGCTGCCCAACAGGCTTGGGAG 182998
Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
| || |||||||||||| | || ||| | | | || |||||||||||||| ||||| |
Sbjct 182999 AACCATGCTTTGACAAGCTGGAAGCCAAGTTGGGACATGCCATGCTGTCGATACCGGCGA 183058
Query 19165 CCAAGGGATTCGAGATTGGC 19184
||||||| || ||||| |||
Sbjct 183059 CCAAGGGGTTTGAGATCGGC 183078
>seq19
Length=561377
Score = 95.1 bits (104), Expect = 1e-13
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 1852022 ACCTCGTCGGGATCGTCGAG---GCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTG 1852078
||| |||| | ||||| || | ||||||||||| ||| || | |||||||||
Sbjct 494440 ACCACGTCTGCGTCGTCTAGTACGTCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTT 494381
Query 1852079 CCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCG 1852138
|| | | || || || || || | ||||| | || ||| ||||| | ||||||
Sbjct 494380 CCTCCTT--GT-AGACCGGGAACCATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCG 494324
Query 1852139 AGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAAC 1852198
| || ||| || || | || || |||||||||||||| || ||||||
Sbjct 494323 ATCTTGGGAAGGACATCCTTTGCGAGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAAC 494264
Query 1852199 TGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250
||| |||| || ||||||| ||||||||| ||||||||||| || |||||||
Sbjct 494263 TGGACGTCTACATCGAGGTACTGCTCGTCAAGGGCCTGCATAAGTGGGTAGA 494212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107126397909452
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