Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 152 6e-31 seq15 145 9e-29 seq4 143 3e-28 seq19 95.1 1e-13 >seq11 Length=1087396 Score = 152 bits (168), Expect = 6e-31 Identities = 138/171 (81%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || |||| ||| | ||||| ||| | || || ||| | |||||||||| Sbjct 263700 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTTTTCGAGATTATCCTCGCCG 263758 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||| |||| ||||| | || |||||| | || || ||||||| Sbjct 263759 CCAACTACCTGGACATCAAGGCTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGA 263818 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| |||||||| |||||||| |||||| || ||| Sbjct 263819 TCAAGGGCAAGTCACCCGATGAGATCCGTAAGACCTTCAACATCCAGAACG 263869 >seq15 Length=714589 Score = 145 bits (160), Expect = 9e-29 Identities = 212/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| ||||| || |||| ||| | || ||||||||||| | ||| ||||| || Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 178756 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | ||| || ||||| |||||||| ||||| || Sbjct 178757 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 178816 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | ||| ||||| ||||| |||| || | ||||| Sbjct 178817 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 178876 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| | ||| |||| || ||||| ||| | |||||| ||||||||| Sbjct 178877 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 178936 Score = 109 bits (120), Expect = 7e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| ||||||||| ||||||| ||||| ||||| ||||| || ||| ||||||||| Sbjct 178484 CATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTT 178543 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| ||||| || || | | | ||| |||||||| ||||| ||||| Sbjct 178544 GCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTA 178603 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| ||||| || ||||||| ||| || Sbjct 178604 GATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636 Score = 89.7 bits (98), Expect = 6e-12 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 ||||||| || || || || | ||| || ||||| | ||||||||| |||| ||| Sbjct 177583 GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATG 177642 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| |||||||||| ||||| || || | ||| || |||||| | || Sbjct 177643 GC-TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCA 177701 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT 1627480 | ||| ||||||||||||| ||||||| Sbjct 177702 ATGAGCAGCGAGTTGCGCACACCGTGCT 177729 >seq4 Length=2069545 Score = 143 bits (158), Expect = 3e-28 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| ||||||||||| || | || || || Sbjct 1052969 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATG 1053028 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | | |||| ||| || ||||| | | Sbjct 1053029 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC 1053088 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 1053089 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGC 1053148 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||||||| ||||| | ||| ||||||||||| || |||| Sbjct 1053149 AGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATG 1053208 Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || ||| | | | | ||| ||||||||| |||| | | | |||| |||||| Sbjct 1053209 ATAGCTCTGACAGACTC-TGGGC--TGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAG 1053265 Query 868988 GCAAAGTCGCAGTGCA 869003 || |||||| ||||| Sbjct 1053266 GCGAAGTCGGTGTGCA 1053281 Score = 104 bits (114), Expect = 3e-16 Identities = 177/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | |||||| || ||| ||||| ||||| ||| | |||| | | ||| Sbjct 1053566 GAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGT 1053625 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | ||| || | | ||||||||| || ||||| ||| ||| ||||| Sbjct 1053626 ACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAG 1053685 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807 || || |||||||| ||| ||| ||||||||| ||| |||| || | ||||| Sbjct 1053686 AAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG--ACGCTTGTTCCAGT 1053743 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | ||| | |||||| | |||||| |||||||||| || ||||||||||| | Sbjct 1053744 CGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCT 1053803 Query 869868 TGTACATCTCCCATAC 869883 ||||||||| ||| || Sbjct 1053804 TGTACATCTGCCAGAC 1053819 Score = 91.5 bits (100), Expect = 2e-12 Identities = 196/289 (68%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| || | || |||||||| || ||||||||| Sbjct 1053284 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 1053343 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | |||| || ||| ||||| ||||| || ||||| || Sbjct 1053344 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 1053403 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 | | ||| || | ||| || ||| ||| | ||||| |||||| || ||| Sbjct 1053404 GCAACGAGGCGGTTGGCGAA--TGTGGAG----TTCTTGTCGGAGATCCATCGCAGGGCC 1053457 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| || | | | || | ||||||||||| ||||||| ||| Sbjct 1053458 CAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGC 1053515 Query 869417 TCGGC--CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || || | | || |||||||| || || || |||||||| Sbjct 1053516 GCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 1053564 Score = 86.0 bits (94), Expect = 8e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| || ||||| ||||| ||||| | | || ||||| | || | Sbjct 182939 AGGACAGCATAGGTGGCACAGTGACTTGCGTCATAAGAGGCTGCCCAACAGGCTTGGGAG 182998 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 | || |||||||||||| | || ||| | | | || |||||||||||||| ||||| | Sbjct 182999 AACCATGCTTTGACAAGCTGGAAGCCAAGTTGGGACATGCCATGCTGTCGATACCGGCGA 183058 Query 19165 CCAAGGGATTCGAGATTGGC 19184 ||||||| || ||||| ||| Sbjct 183059 CCAAGGGGTTTGAGATCGGC 183078 >seq19 Length=561377 Score = 95.1 bits (104), Expect = 1e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1852022 ACCTCGTCGGGATCGTCGAG---GCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTG 1852078 ||| |||| | ||||| || | ||||||||||| ||| || | ||||||||| Sbjct 494440 ACCACGTCTGCGTCGTCTAGTACGTCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTT 494381 Query 1852079 CCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCG 1852138 || | | || || || || || | ||||| | || ||| ||||| | |||||| Sbjct 494380 CCTCCTT--GT-AGACCGGGAACCATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCG 494324 Query 1852139 AGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAAC 1852198 | || ||| || || | || || |||||||||||||| || |||||| Sbjct 494323 ATCTTGGGAAGGACATCCTTTGCGAGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAAC 494264 Query 1852199 TGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 ||| |||| || ||||||| ||||||||| ||||||||||| || ||||||| Sbjct 494263 TGGACGTCTACATCGAGGTACTGCTCGTCAAGGGCCTGCATAAGTGGGTAGA 494212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107126397909452