Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq15 196 4e-45
seq1 109 5e-19
>seq15
Length=714589
Score = 196 bits (216), Expect = 4e-45
Identities = 968/1526 (63%), Gaps = 60/1526 (4%)
Strand=Plus/Plus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||| || ||||| || | || || || || |||||| |||| | ||||| ||
Sbjct 177591 ACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAG 177650
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
| |||||||| ||||||||||| | |||| || || |||||| || | | ||
Sbjct 177651 CACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGC 177710
Query 138628 GAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685
|| || || | |||||| ||| ||| ||||| || |||| ||||||||| | |
Sbjct 177711 GAGTTGCGCACACCGTGCTCAGCAATCTTC--TCCTTCAGAGACGCCCAGTCCCAGAGGT 177768
Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745
| |||| | ||||||||||||||||| | || ||| | ||||| ||||
Sbjct 177769 CAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTT 177828
Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805
|||| | | ||| ||||| ||| | || | ||| | ||| ||| |||
Sbjct 177829 CGTAGGTCTTGTAAGGACCAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCAT 177888
Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865
||| || || || || || |||||| || ||| | |||| | || |
Sbjct 177889 GGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAA 177948
Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925
|||||| ||| || || || || ||||| || |||| |||| || || ||||
Sbjct 177949 GGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGC 178008
Query 138926 GCAGATTTGACGCTTT-TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTT 138984
| | | ||| || ||| |||||| ||| || | ||| || |||||||| |||||
Sbjct 178009 GGA-AGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGATCTTGTTC 178067
Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCC 139043
|| || || ||| || | || | | | | | | | | || || | || |
Sbjct 178068 AAGTTGCGGGTGACAACTTGTGT-GACTTCGTGGAGCTTCTTGAAGTCAAACACACCGGC 178126
Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103
|||| |||||| | | || | | || | || || | |||||| || ||
Sbjct 178127 CTTGTAGTCGACAAA----AGAAGGCAG--GGCAAGA---GAAGCCAAGTTGCAAACGGC 178177
Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163
|| || || || | |||| || ||||| || | ||||| || | ||| ||
Sbjct 178178 GACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGT 178237
Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223
||| | || | || ||||| || ||||| ||||| || |||||||||||| | || |
Sbjct 178238 ACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTT 178297
Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACG 139283
||||| || || | ||| | |||| | | ||| ||||| | | |
Sbjct 178298 ACCAGTCTCGGTCTGCGCCTCAAGAATGGCGT--ACCAA------AGCTTTTGT-----G 178344
Query 139284 CACGTAAAGT-TCGTCGCGCTCGTACT------------TTTCGTAGAGTTCGTCGAATC 139330
| || | ||| ||| || || || || | ||||| || | ||||||
Sbjct 178345 CGCGAACAGTCTCGCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATT 178404
Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390
|||||||||| | || | || | | |||| || || |||||||| | ||| ||
Sbjct 178405 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGC 178464
Query 139391 CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC 139450
|||| | | ||| ||| ||||||| || || |||||||||| ||| | | | |||||
Sbjct 178465 CGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGC 178524
Query 139451 GCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510
| || || ||| || ||| || || |||||| |||| |||||||
Sbjct 178525 GAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAG 178584
Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGA 139567
|||||||||| || || |||||||| | || ||| || ||| ||||| || ||||
Sbjct 178585 CGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGA 178644
Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627
| | || ||| || ||| |||| || | ||| || |||||| | | ||||||||
Sbjct 178645 CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGT 178704
Query 139628 TGGTGCTACGGATGG----GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683
| |||| || |||| | | || ||| || | | || || |||| ||| ||
Sbjct 178705 TAGTGCCACCGATGTATGAGCCAGT----AGCACGAATGCGGTGCACGTTGAGGCCAATA 178760
Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTAT 139742
||||| | ||||| || || | || || | | ||| ||||| || || ||
Sbjct 178761 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGTCGTAAATGCCGTCGAT 178819
Query 139743 GCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGC 139802
|||||| |||| ||| || || ||||||||||| | ||| ||| | ||||| ||
Sbjct 178820 GCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGC 178879
Query 139803 TGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862
|||| || || ||||| ||||| | || ||||| | ||||| || ||
Sbjct 178880 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 178939
Query 139863 GATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922
|||||| || |||| || ||||| || || |||| || ||||| ||||| |||||
Sbjct 178940 GATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 178999
Query 139923 GATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTG 139980
|| ||||| ||| ||| | || ||||| | || ||| || ||||||
Sbjct 179000 TGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACG--CTCGAGTGTCTTG 179057
Query 139981 TAGCCAAAGTACCTATAGTTGAAATC 140006
| |||||| || |||||||| ||
Sbjct 179058 AAACCAAAGAACTGGTAGTTGAAGTC 179083
>seq1
Length=2771824
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || ||||| || || ||||| | ||||| || | | |
Sbjct 1871513 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 1871454
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | ||||| |||||||| ||||| || || || ||||| || ||
Sbjct 1871453 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 1871394
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || || || || || |||||||| || ||| | ||||| || |||
Sbjct 1871393 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 1871334
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || ||||| || || || |||||||||
Sbjct 1871333 ATCCAGAAGGAGTCTACTCTCCACTTGGTG 1871304
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || || || || || |||||||| || ||| | | |
Sbjct 1871741 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 1871682
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || ||||| || |||
Sbjct 1871681 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 1871622
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| ||||| || ||| |||| || | | | || || || |||
Sbjct 1871621 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 1871562
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| |||||||| || ||||| ||| | || | || ||||||| ||
Sbjct 1871561 ATCCAAAAGGAGTCCACACTGCACCTTGTCCTCCGCCTGCGCGGTGG 1871515
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
||||| || || || || || || || || | ||||||| | || | || || |
Sbjct 1871945 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 1871886
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| || || || ||||| ||||| ||||| | ||||| ||||| ||
Sbjct 1871885 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 1871826
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| || ||||| | | | |||| || || |||||||| ||||| || ||||| |||
Sbjct 1871825 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 1871766
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
| || | || ||||||| ||
Sbjct 1871765 CTTGTCCTCCGCCTGCGCGGTGG 1871743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449896722699680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |