Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
>seq2
Length=2716540
Score = 114 bits (126), Expect = 1e-20
Identities = 228/333 (68%), Gaps = 6/333 (2%)
Strand=Plus/Plus
Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377
|| ||||| ||||| | || | | || | || ||||| |||||| ||||||||
Sbjct 1643224 TCGGTCTCGGGGTTCTTGCACTTCTTGCAGAGGACGAACTTTGAGATGAAGCCATCAAGG 1643283
Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437
|||||| | ||| || ||| |||| ||||||| ||| | || || | |||
Sbjct 1643284 TAGTCCTGGAGCTTGCTGGCGTCATGGGCACCGTTGATGATCCAACGGTCATCGTTGGGG 1643343
Query 34438 -TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTT--TGTCGGGTAAATGGCC 34494
||| || || || || || || ||| | || |||||||| || || | | ||
Sbjct 1643344 CTCGTGTTG-GTCTGAGCTCCGAGTTCGAAACCAAAGTACTTGATGACGTGAGCAGGG-- 1643400
Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554
|| || | || | || || | | || |||||| ||||| |||||||||||||||
Sbjct 1643401 GGGCGGGCGAGAGACTGAGCCACGCTGCTCAGGTTGACAATGACGGTCTTGATGCCGTTG 1643460
Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614
||||| ||||||| ||||| ||||||| ||| |||||||||||||| | ||| |
Sbjct 1643461 CCCTTGCCTTCGATCTTGGACTGGATGCGCTCCATCTTGTAGCGGTAGAAGGGGTCGGTG 1643520
Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647
|||| |||| || ||| || || |||| |||
Sbjct 1643521 ACATCGCGGCGAATGTTGACGGTAGCCATGGTG 1643553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412840815084908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |