Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 145 1e-28 seq15 131 3e-24 seq4 131 3e-24 seq19 111 2e-18 >seq11 Length=1087396 Score = 145 bits (160), Expect = 1e-28 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | || || ||| | |||||||||||||||||||| ||||||||| Sbjct 263720 AGGTCGACCAGGAGATGCTTTTCGAGATTATCCTCGCCGCCAACTACCTGGACATCAAGG 263779 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | |||||||| | || ||||||||||| || ||| | |||||||||||||| ||||| | Sbjct 263780 CTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 263839 Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||| |||||||| |||||| || ||| Sbjct 263840 AGATCCGTAAGACCTTCAACATCCAGAACG 263869 >seq15 Length=714589 Score = 131 bits (144), Expect = 3e-24 Identities = 209/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| | || ||||||||||| | || ||||| || Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 178756 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | ||| || | || || || ||||| ||||| || Sbjct 178757 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 178816 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| |||| || | ||||| Sbjct 178817 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 178876 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||| | ||| |||| || ||| | ||| ||| |||||| |||||||| Sbjct 178877 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 178936 Score = 127 bits (140), Expect = 3e-23 Identities = 275/410 (67%), Gaps = 14/410 (3%) Strand=Plus/Plus Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669 |||| || ||||||| ||||||||| | ||||| |||||||||| ||||| ||| Sbjct 178234 TGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGG 178293 Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCAC 2071727 | ||| |||||| |||||||| | ||||| |||||| ||| | ||||| || Sbjct 178294 GGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAG 178353 Query 2071728 ---CGAGGTCCTCGCGCGGCC-CTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGG 2071783 || || ||| | | || || | ||||| || || | Sbjct 178354 TCTCGCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGT------ACAGGGCCTCGAATTCTT 178407 Query 2071784 CGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGC 2071843 | |||| | ||| ||||| || |||| |||||| | ||| | ||||| |||| Sbjct 178408 CACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGT 178467 Query 2071844 CAGTCACC-ACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGC 2071902 ||| || || ||| || ||||| |||||||| |||| ||||||||||| Sbjct 178468 T-GTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGA 178526 Query 2071903 GCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCG 2071962 || ||| ||||||||||||||||||||| |||||| || || | | || ||| ||| Sbjct 178527 GCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCG 178586 Query 2071963 TGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||||| |||||| ||| ||||| || ||||||| ||| || Sbjct 178587 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636 >seq4 Length=2069545 Score = 131 bits (144), Expect = 3e-24 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| |||||| |||||| ||||||||||| || | | Sbjct 1052961 TGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 1053020 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||||| | ||||| ||| || |||| Sbjct 1053021 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 1053080 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||| |||||||| || ||||| ||||||||||| | ||||||| Sbjct 1053081 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 1053140 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || || || | ||||| | ||||| | ||| ||||||||||| | Sbjct 1053141 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 1053200 Query 794131 CGATGATGAT 794140 | ||||||| Sbjct 1053201 CAGTGATGAT 1053210 Score = 118 bits (130), Expect = 2e-20 Identities = 203/292 (70%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || |||||||| || ||||||||||||||||| ||||||| |||| || ||| Sbjct 1053320 AGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAG 1053379 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| ||||| || ||||| || | ||||| || | ||| || ||| | || Sbjct 1053380 AAGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTG---GAGTTCTTG 1053436 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | | |||||| || ||||| || ||||| || | | |||| | |||||||| Sbjct 1053437 TCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATG 1053496 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGAC--CGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614 ||| ||||||| ||| | | | || || | | ||| ||||||||||| || | Sbjct 1053497 GCGTTGAAGAGGT--ACCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAG 1053554 Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||||||||||||| | ||| || || ||| ||||| || || ||||| Sbjct 1053555 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCA 1053606 Score = 104 bits (114), Expect = 4e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | ||| || || | ||| || | | |||||||| || ||||| Sbjct 1053611 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 1053670 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 ||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| |||| Sbjct 1053671 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 1053730 Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||| | ||| | |||||||| |||||| |||||||| || || Sbjct 1053731 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 1053790 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||||||||| |||||||||| ||| Sbjct 1053791 GCCTCGGCCTTCTTGTACATCTGCCA 1053816 >seq19 Length=561377 Score = 111 bits (122), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 || ||||||||| ||| || | ||||||||| || |||||| || || || ||| Sbjct 494416 TCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCC-TCCTTGTAGA--CCGGGAACC 494360 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | ||||| | || ||| ||||| |||||| | | || ||| || || Sbjct 494359 ATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCGATCTTGGGAAGGACATCCTTTGCG 494300 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | || ||||||||||||||||| || ||||||||| |||| || ||||||| |||| Sbjct 494299 AGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGC 494240 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAG 2411597 ||||| ||||||||||| || ||||||| ||| Sbjct 494239 TCGTCAAGGGCCTGCATAAGTGGGTAGATGAG 494208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916229805568484