Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq11 145 1e-28
seq15 131 3e-24
seq4 131 3e-24
seq19 111 2e-18
>seq11
Length=1087396
Score = 145 bits (160), Expect = 1e-28
Identities = 122/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | || || ||| | |||||||||||||||||||| |||||||||
Sbjct 263720 AGGTCGACCAGGAGATGCTTTTCGAGATTATCCTCGCCGCCAACTACCTGGACATCAAGG 263779
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
| |||||||| | || ||||||||||| || ||| | |||||||||||||| ||||| |
Sbjct 263780 CTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 263839
Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||| |||||||| |||||| || |||
Sbjct 263840 AGATCCGTAAGACCTTCAACATCCAGAACG 263869
>seq15
Length=714589
Score = 131 bits (144), Expect = 3e-24
Identities = 209/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||||||||| || |||| ||| | || ||||||||||| | || ||||| ||
Sbjct 178637 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 178696
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| | | ||| | ||| | || || | |||| || | |||
Sbjct 178697 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 178756
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| ||||| || | ||||||||| | ||| || | || || || ||||| ||||| ||
Sbjct 178757 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 178816
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| ||||| |||| || | |||||
Sbjct 178817 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 178876
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|| ||||| | ||| |||| || ||| | ||| ||| |||||| ||||||||
Sbjct 178877 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 178936
Score = 127 bits (140), Expect = 3e-23
Identities = 275/410 (67%), Gaps = 14/410 (3%)
Strand=Plus/Plus
Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669
|||| || ||||||| ||||||||| | ||||| |||||||||| ||||| |||
Sbjct 178234 TGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGG 178293
Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCAC 2071727
| ||| |||||| |||||||| | ||||| |||||| ||| | ||||| ||
Sbjct 178294 GGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAG 178353
Query 2071728 ---CGAGGTCCTCGCGCGGCC-CTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGG 2071783
|| || ||| | | || || | ||||| || || |
Sbjct 178354 TCTCGCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGT------ACAGGGCCTCGAATTCTT 178407
Query 2071784 CGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGC 2071843
| |||| | ||| ||||| || |||| |||||| | ||| | ||||| ||||
Sbjct 178408 CACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGT 178467
Query 2071844 CAGTCACC-ACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGC 2071902
||| || || ||| || ||||| |||||||| |||| |||||||||||
Sbjct 178468 T-GTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGA 178526
Query 2071903 GCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCG 2071962
|| ||| ||||||||||||||||||||| |||||| || || | | || ||| |||
Sbjct 178527 GCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCG 178586
Query 2071963 TGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| ||||| |||||| ||| ||||| || ||||||| ||| ||
Sbjct 178587 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACC 178636
>seq4
Length=2069545
Score = 131 bits (144), Expect = 3e-24
Identities = 179/250 (72%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| |||||| |||||| ||||||||||| || | |
Sbjct 1052961 TGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 1053020
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | ||| ||||||| | ||||| ||| || ||||
Sbjct 1053021 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 1053080
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||| ||||| |||||||| || ||||| ||||||||||| | |||||||
Sbjct 1053081 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 1053140
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || || || | ||||| | ||||| | ||| ||||||||||| |
Sbjct 1053141 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 1053200
Query 794131 CGATGATGAT 794140
| |||||||
Sbjct 1053201 CAGTGATGAT 1053210
Score = 118 bits (130), Expect = 2e-20
Identities = 203/292 (70%), Gaps = 7/292 (2%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| |||||||| || ||||||||||||||||| ||||||| |||| || |||
Sbjct 1053320 AGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAG 1053379
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
||||| ||||| || ||||| || | ||||| || | ||| || ||| | ||
Sbjct 1053380 AAGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTG---GAGTTCTTG 1053436
Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
| | |||||| || ||||| || ||||| || | | |||| | ||||||||
Sbjct 1053437 TCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATG 1053496
Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGAC--CGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614
||| ||||||| ||| | | | || || | | ||| ||||||||||| || |
Sbjct 1053497 GCGTTGAAGAGGT--ACCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAG 1053554
Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|||||||||||||||| | ||| || || ||| ||||| || || |||||
Sbjct 1053555 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCA 1053606
Score = 104 bits (114), Expect = 4e-16
Identities = 147/206 (71%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|||||||| | ||| || || | ||| || | | |||||||| || |||||
Sbjct 1053611 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 1053670
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268
||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| ||||
Sbjct 1053671 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 1053730
Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
| | ||||| | ||| | |||||||| |||||| |||||||| || ||
Sbjct 1053731 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 1053790
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352
||||||||||| |||||||||| |||
Sbjct 1053791 GCCTCGGCCTTCTTGTACATCTGCCA 1053816
>seq19
Length=561377
Score = 111 bits (122), Expect = 2e-18
Identities = 153/212 (72%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445
|| ||||||||| ||| || | ||||||||| || |||||| || || || |||
Sbjct 494416 TCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCC-TCCTTGTAGA--CCGGGAACC 494360
Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505
| ||||| | || ||| ||||| |||||| | | || ||| || ||
Sbjct 494359 ATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCGATCTTGGGAAGGACATCCTTTGCG 494300
Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565
| || ||||||||||||||||| || ||||||||| |||| || ||||||| ||||
Sbjct 494299 AGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGC 494240
Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAG 2411597
||||| ||||||||||| || ||||||| |||
Sbjct 494239 TCGTCAAGGGCCTGCATAAGTGGGTAGATGAG 494208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916229805568484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |