Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq24 104 9e-17 >seq24 Length=415601 Score = 104 bits (114), Expect = 9e-17 Identities = 153/207 (74%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 309643 ACCCTCTCGCCCCTCAAAG-CTCCAACCTTCGAT-GC-GACAATCTCCATCAACTTGGCG 309699 ||||||| | ||| || | | || ||||| || || |||| ||| ||||| | ||| Sbjct 163951 ACCCTCTTGTCCCGTAATGGCACCGACCTTGGAGAGCAGACA--CTCGATCAAATGGGCA 164008 Query 309700 ATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTCAGGTCTCATTCCGGTG 309759 || ||||||||||| |||||||| | |||||||||| | || ||| | | ||| | Sbjct 164009 ATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGATCAGATCCGGTGTGAGTCCC-TC 164067 Query 309760 ATTGGGTTGAAAGGCATATCTTCTTCA-GGTACAATCAAACCAATAGTTCCCTTTTGAGC 309818 ||| ||| ||||||||||| | |||| | | |||||| |||||||||||| | Sbjct 164068 CCTGGA--GAATGGCATATCTTCCTGGCGGTAGG-TGATACCAATGGTTCCCTTTTGACC 164124 Query 309819 GTGCCTGGAAGCAAACTTGTCACCAAT 309845 ||| | |||||||||||||||||||| Sbjct 164125 GTGACGAGAAGCAAACTTGTCACCAAT 164151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951970498491168