Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq15 315 7e-81
seq4 158 1e-33
seq1 111 2e-19
seq3 87.8 2e-12
>seq15
Length=714589
Score = 315 bits (348), Expect = 7e-81
Identities = 1132/1754 (65%), Gaps = 51/1754 (3%)
Strand=Plus/Plus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111
|||||| ||||||||| || || ||||||||||||||||| ||||||| || ||
Sbjct 177377 CGACTGAGACTGGTCAATAAAAGCACCACGGTCAGCGGCCATCTCAATGATTC---TTCG 177433
Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168
|| | ||||||||| | |||||||| || ||| | | || || ||| | ||
Sbjct 177434 CTGCGAGATCTCCCAGACGGTCTTGTAAAGTGTCTTTGTCTCCTCAGGGATGTTGGGAAT 177493
Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228
| | ||| || | | || | || | || ||| | || | | ||
Sbjct 177494 CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACC 177553
Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288
| |||| ||||| | || || | | || || ||||| ||||| || ||||| ||
Sbjct 177554 CATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGAC 177613
Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348
|| || ||| | |||| || | || || || ||||||||||||||| ||||||
Sbjct 177614 ACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 177673
Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408
| || | || || |||||| || | |||||||||||||||| |||| | |
Sbjct 177674 TGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGC 177733
Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468
|| || |||||||| ||||||||||||||| | || || || |||||||| ||
Sbjct 177734 AATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATTCCACATATC 177793
Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528
|||||| || || || || |||| || ||||| | |||| || || || |
Sbjct 177794 GTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTC 177853
Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588
| || | ||||| | ||| || | | ||| || ||||| ||||| |
Sbjct 177854 CTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGAT 177913
Query 148589 GTTGAGCAGCGCCGC--CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646
||||||| | || || || | ||| | || | || || | || || ||
Sbjct 177914 GTTGAGCTTCTTAGCTTCGTCTGAC--TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCA 177971
Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706
||||| || || || |||| || ||||| ||||| | |||| | |||| || |||
Sbjct 177972 GCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTC 178030
Query 148707 -TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG 148764
|||| || ||||||||| |||||||||||| ||||| ||||| || || | ||
Sbjct 178031 TTCGACAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAG-TTGCGGGTGACAACTTGTG 178089
Query 148765 TAATTCTGCGCAGC------AATTCAAA---ATCGTACTTGTCATCTACGATGCATCGGT 148815
| | | | | ||| || ||||| | || ||||| || || | | |
Sbjct 178090 TGACTTCGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGG-- 178147
Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875
|| ||| | ||| || | ||||| ||||| |||||| || || ||||||| || |
Sbjct 178148 -CAGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAA 178206
Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935
|||| | ||||| ||| || ||| || | |||||| || |||||||||| ||
Sbjct 178207 TCTCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGT 178266
Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993
|||| ||||||||||| ||||| | || ||||| || ||||| || | ||
Sbjct 178267 TGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGG 178326
Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCA--CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA 149050
| ||| | || | |||||| || || || || | | || || ||||||
Sbjct 178327 CGTACCAAAGC-TTTTGTGCGCGAACAGTCTCGCGGCCCTT----GTTCTGCTTCTCGTA 178381
Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110
||||| |||||| | || |||||| |||| |||| || ||||||| ||
Sbjct 178382 GCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTT 178441
Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170
|||||||||||| | ||| ||||| | | || |||||||| || || || || |
Sbjct 178442 CGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAAT 178501
Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230
||| || ||||| | ||| ||||| || | || || ||| ||| ||||||
Sbjct 178502 CCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 178561
Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290
|| || | || || | ||| |||||||| ||||| | ||| | |||| || ||
Sbjct 178562 GTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 178621
Query 149291 GCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347
|||| ||||| ||||||||||| | ||| | ||||||| | || || | ||| ||
Sbjct 178622 GCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 178681
Query 149348 TTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCAC 149404
|||| || | | || |||||||| | ||| ||| || || |
Sbjct 178682 ---AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAAT 178738
Query 149405 TTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAG 149464
||||||||||| ||| || ||||| || ||| ||||| ||| ||| |||
Sbjct 178739 GCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAG 178798
Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524
|| ||| ||||| ||||||||||| ||||||| | || ||||| || ||||
Sbjct 178799 TGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACAT 178858
Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTG 149584
||| || | | ||||| || ||||| || || ||||||||| || || || ||
Sbjct 178859 TTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTG 178918
Query 149585 GCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGC 149644
||| ||||| | ||||| | || |||||||| || || ||||| | ||
Sbjct 178919 AGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGC 178978
Query 149645 GACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAA 149701
|| ||||| ||||| || || || ||||| || || || |||| || ||| |
Sbjct 178979 AACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTT---ATGCGGAGGAG 179035
Query 149702 GTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTC 149761
|| || ||||||||| | |||||| ||| ||||| ||||| ||| ||| | |
Sbjct 179036 ATATGAACGCTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGAC 179095
Query 149762 AATGGCGGCGTCGA 149775
|| || | || ||
Sbjct 179096 GATAGCCGAGTTGA 179109
>seq4
Length=2069545
Score = 158 bits (174), Expect = 1e-33
Identities = 353/521 (68%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| ||||||||||| ||||| || ||||| || || || ||| |||||||| |
Sbjct 1052974 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 1053033
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| | |||| || || | ||| | | |||||
Sbjct 1053034 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 1053093
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529
||||| || || ||||| ||||| | ||||||| || | ||||||||||| |||| |
Sbjct 1053094 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTA-GCGTTCATGCCGAGCAGAG 1053152
Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588
| || | | || || | || ||||||| |||||| || || || || ||| ||
Sbjct 1053153 CGCATGGTAGTG-CGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATA 1053211
Query 120589 GC---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645
|| || || | | ||| | || ||||| |||| | | | | || |||||
Sbjct 1053212 GCTCTGA-CAGACTCTGGGCTGG--GCTTGTTCTCGAGGAGAG---AGAAGAGAAGGCAG 1053265
Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705
|| ||||| ||||||| ||||||||| || || || ||||||||| || || || |||
Sbjct 1053266 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCG 1053325
Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765
||||| | || | |||||| |||| |||| ||| || || ||||| |
Sbjct 1053326 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATA 1053385
Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825
||||| || ||| || || || | ||| | ||| || || | ||||| | ||||
Sbjct 1053386 CCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATC 1053445
Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866
|| || |||||| |||||||| ||||| | ||| || ||
Sbjct 1053446 CATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 1053486
>seq1
Length=2771824
Score = 111 bits (122), Expect = 2e-19
Identities = 145/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || | ||| || || || || |||||||| |
Sbjct 1871317 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG--TCTTCCAGCTGCTTAC 1871374
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| ||||||| ||||||||||| |||||||| || |||||||| |||||| ||
Sbjct 1871375 CAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 1871434
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||||| | | ||| || || | || | ||| || ||||| ||||
Sbjct 1871435 TTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAG 1871494
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 1871495 TCTTGACAAAGATCTGCAT 1871513
Score = 109 bits (120), Expect = 5e-19
Identities = 129/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| ||| || ||| ||||||||| ||||| ||
Sbjct 1871773 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 1871832
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || || ||||| || ||||||||||| |||||||| ||||||| ||||
Sbjct 1871833 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 1871892
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
| | || | ||||||| | ||| || || | |||| ||| ||||||||||
Sbjct 1871893 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 1871947
Score = 98.7 bits (108), Expect = 1e-15
Identities = 132/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || || ||||| || ||||| ||| || ||| ||| | ||||| ||||
Sbjct 1872047 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCCTCAAGCT 1872105
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| ||| | || | ||||||||||| || || ||||| |||||||| |||||
Sbjct 1872106 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 1872165
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | || | ||||| | | ||| || |||| ||||| ||| || ||||
Sbjct 1872166 TGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGG 1872225
Query 133636 T 133636
|
Sbjct 1872226 T 1872226
>seq3
Length=2234992
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 116482 CACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACACTTCAAC 116541
||||| |||| |||||||||| || ||||||||||| |||||||| |||||||||
Sbjct 1600624 CACGTCCACGCCTTTGGCGACAACACAAACGGCTGCACATCCGCCGGTCCCCACTTCAAC 1600683
Query 116542 CCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGACCTGGGC 116601
||| | | || ||||| || ||| | | || | || |||||||||||| |||||
Sbjct 1600684 CCCCACAACAAGACACACGGTGCCCCCGAGGACGAGGAGCGCCACGTCGGTGACTTGGGC 1600743
Query 116602 AAC 116604
|||
Sbjct 1600744 AAC 1600746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483419857329440
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