Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq15 315 7e-81 seq4 158 1e-33 seq1 111 2e-19 seq3 87.8 2e-12 >seq15 Length=714589 Score = 315 bits (348), Expect = 7e-81 Identities = 1132/1754 (65%), Gaps = 51/1754 (3%) Strand=Plus/Plus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 |||||| ||||||||| || || ||||||||||||||||| ||||||| || || Sbjct 177377 CGACTGAGACTGGTCAATAAAAGCACCACGGTCAGCGGCCATCTCAATGATTC---TTCG 177433 Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 || | ||||||||| | |||||||| || ||| | | || || ||| | || Sbjct 177434 CTGCGAGATCTCCCAGACGGTCTTGTAAAGTGTCTTTGTCTCCTCAGGGATGTTGGGAAT 177493 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | | ||| || | | || | || | || ||| | || | | || Sbjct 177494 CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACC 177553 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 | |||| ||||| | || || | | || || ||||| ||||| || ||||| || Sbjct 177554 CATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGAC 177613 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || || ||| | |||| || | || || || ||||||||||||||| |||||| Sbjct 177614 ACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 177673 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | || | || || |||||| || | |||||||||||||||| |||| | | Sbjct 177674 TGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGC 177733 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 || || |||||||| ||||||||||||||| | || || || |||||||| || Sbjct 177734 AATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATTCCACATATC 177793 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 |||||| || || || || |||| || ||||| | |||| || || || | Sbjct 177794 GTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTC 177853 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || | ||||| | ||| || | | ||| || ||||| ||||| | Sbjct 177854 CTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGAT 177913 Query 148589 GTTGAGCAGCGCCGC--CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646 ||||||| | || || || | ||| | || | || || | || || || Sbjct 177914 GTTGAGCTTCTTAGCTTCGTCTGAC--TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCA 177971 Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706 ||||| || || || |||| || ||||| ||||| | |||| | |||| || ||| Sbjct 177972 GCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTC 178030 Query 148707 -TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG 148764 |||| || ||||||||| |||||||||||| ||||| ||||| || || | || Sbjct 178031 TTCGACAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAG-TTGCGGGTGACAACTTGTG 178089 Query 148765 TAATTCTGCGCAGC------AATTCAAA---ATCGTACTTGTCATCTACGATGCATCGGT 148815 | | | | | ||| || ||||| | || ||||| || || | | | Sbjct 178090 TGACTTCGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGG-- 178147 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || ||| | ||| || | ||||| ||||| |||||| || || ||||||| || | Sbjct 178148 -CAGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAA 178206 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||| | ||||| ||| || ||| || | |||||| || |||||||||| || Sbjct 178207 TCTCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGT 178266 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993 |||| ||||||||||| ||||| | || ||||| || ||||| || | || Sbjct 178267 TGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGG 178326 Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCA--CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA 149050 | ||| | || | |||||| || || || || | | || || |||||| Sbjct 178327 CGTACCAAAGC-TTTTGTGCGCGAACAGTCTCGCGGCCCTT----GTTCTGCTTCTCGTA 178381 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 ||||| |||||| | || |||||| |||| |||| || ||||||| || Sbjct 178382 GCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTT 178441 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 |||||||||||| | ||| ||||| | | || |||||||| || || || || | Sbjct 178442 CGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAAT 178501 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 ||| || ||||| | ||| ||||| || | || || ||| ||| |||||| Sbjct 178502 CCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 178561 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 || || | || || | ||| |||||||| ||||| | ||| | |||| || || Sbjct 178562 GTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 178621 Query 149291 GCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||| ||||| ||||||||||| | ||| | ||||||| | || || | ||| || Sbjct 178622 GCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 178681 Query 149348 TTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCAC 149404 |||| || | | || |||||||| | ||| ||| || || | Sbjct 178682 ---AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAAT 178738 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAG 149464 ||||||||||| ||| || ||||| || ||| ||||| ||| ||| ||| Sbjct 178739 GCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAG 178798 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 || ||| ||||| ||||||||||| ||||||| | || ||||| || |||| Sbjct 178799 TGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACAT 178858 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTG 149584 ||| || | | ||||| || ||||| || || ||||||||| || || || || Sbjct 178859 TTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTG 178918 Query 149585 GCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGC 149644 ||| ||||| | ||||| | || |||||||| || || ||||| | || Sbjct 178919 AGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGC 178978 Query 149645 GACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAA 149701 || ||||| ||||| || || || ||||| || || || |||| || ||| | Sbjct 178979 AACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTT---ATGCGGAGGAG 179035 Query 149702 GTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTC 149761 || || ||||||||| | |||||| ||| ||||| ||||| ||| ||| | | Sbjct 179036 ATATGAACGCTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGAC 179095 Query 149762 AATGGCGGCGTCGA 149775 || || | || || Sbjct 179096 GATAGCCGAGTTGA 179109 >seq4 Length=2069545 Score = 158 bits (174), Expect = 1e-33 Identities = 353/521 (68%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||||||||| ||||| || ||||| || || || ||| |||||||| | Sbjct 1052974 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 1053033 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | |||| || || | ||| | | ||||| Sbjct 1053034 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 1053093 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||| | ||||||| || | ||||||||||| |||| | Sbjct 1053094 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTA-GCGTTCATGCCGAGCAGAG 1053152 Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 | || | | || || | || ||||||| |||||| || || || || ||| || Sbjct 1053153 CGCATGGTAGTG-CGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATA 1053211 Query 120589 GC---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 || || || | | ||| | || ||||| |||| | | | | || ||||| Sbjct 1053212 GCTCTGA-CAGACTCTGGGCTGG--GCTTGTTCTCGAGGAGAG---AGAAGAGAAGGCAG 1053265 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| ||||||| ||||||||| || || || ||||||||| || || || ||| Sbjct 1053266 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCG 1053325 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||| | || | |||||| |||| |||| ||| || || ||||| | Sbjct 1053326 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATA 1053385 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 ||||| || ||| || || || | ||| | ||| || || | ||||| | |||| Sbjct 1053386 CCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATC 1053445 Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 || || |||||| |||||||| ||||| | ||| || || Sbjct 1053446 CATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 1053486 >seq1 Length=2771824 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | ||| || || || || |||||||| | Sbjct 1871317 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG--TCTTCCAGCTGCTTAC 1871374 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| ||||||||||| |||||||| || |||||||| |||||| || Sbjct 1871375 CAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 1871434 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| | | ||| || || | || | ||| || ||||| |||| Sbjct 1871435 TTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAG 1871494 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1871495 TCTTGACAAAGATCTGCAT 1871513 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| ||||||||| ||||| || Sbjct 1871773 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 1871832 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || ||||| || ||||||||||| |||||||| ||||||| |||| Sbjct 1871833 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 1871892 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | || | ||||||| | ||| || || | |||| ||| |||||||||| Sbjct 1871893 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 1871947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| || ||| ||| | ||||| |||| Sbjct 1872047 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCCTCAAGCT 1872105 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | ||||||||||| || || ||||| |||||||| ||||| Sbjct 1872106 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 1872165 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| | | ||| || |||| ||||| ||| || |||| Sbjct 1872166 TGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGG 1872225 Query 133636 T 133636 | Sbjct 1872226 T 1872226 >seq3 Length=2234992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 116482 CACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACACTTCAAC 116541 ||||| |||| |||||||||| || ||||||||||| |||||||| ||||||||| Sbjct 1600624 CACGTCCACGCCTTTGGCGACAACACAAACGGCTGCACATCCGCCGGTCCCCACTTCAAC 1600683 Query 116542 CCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGACCTGGGC 116601 ||| | | || ||||| || ||| | | || | || |||||||||||| ||||| Sbjct 1600684 CCCCACAACAAGACACACGGTGCCCCCGAGGACGAGGAGCGCCACGTCGGTGACTTGGGC 1600743 Query 116602 AAC 116604 ||| Sbjct 1600744 AAC 1600746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419857329440