Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1 111 1e-19
>seq1
Length=2771824
Score = 111 bits (122), Expect = 1e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| || ||| ||| ||||| |||||||| |||||||| || || |||| ||||| ||
Sbjct 1871539 TGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGC 1871598
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|||||||| || || | |||||| || || | || | ||| || ||||| || |||
Sbjct 1871599 TTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTC 1871658
Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|| | | | |||| ||||||||||||||||| || | |||||| || || || ||
Sbjct 1871659 GACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGT 1871717
Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750
| || || || ||||| ||||||
Sbjct 1871718 CAGGGTCTTGACGAAGATTTGCATA 1871742
Score = 93.3 bits (102), Expect = 3e-14
Identities = 153/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || ||||| ||| || || |||||||| || ||||| || || |
Sbjct 1871298 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 1871357
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
||| |||| || || || || ||||| | ||||||||| || | || | ||| || ||
Sbjct 1871358 GTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTT 1871417
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| || || || | ||| ||| | |||||||| || || || || | || |
Sbjct 1871418 GTCCTGGATCTTGGACTTTA-CATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAA 1871476
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || || || | || || |||||||||||||||
Sbjct 1871477 TGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCATA 1871514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703375051520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |