Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 3e-14
>seq1
Length=2771824
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || ||| |||||| || | || |||||||||||||||
Sbjct 1871657 AAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAACAGCGTCTCATCTTCGCCGGAAAG 1871598
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||||||||||| || | ||| | |||| |||||| |||| || ||||| || || |||
Sbjct 1871597 CAGTTGGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAGTCCACACTGCAC 1871538
Query 206374 CTTGT 206378
|||||
Sbjct 1871537 CTTGT 1871533
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || |||||| | || || || || ||||| |||| || ||| |
Sbjct 1871945 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 1871886
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || ||||| ||| | ||||||||||||||||||
Sbjct 1871885 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 1871826
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | || || || | || || |||| |||||| | ||||| ||||| || || |||
Sbjct 1871825 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 1871766
Query 206374 CTTGT 206378
|||||
Sbjct 1871765 CTTGT 1871761
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || ||||| || || || |||||||| || | |||
Sbjct 1871510 CAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGCGAC 1871451
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| |||||| ||||| || || || || || || || ||| ||
Sbjct 1871450 ACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 1871391
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || || ||||| || |||||| ||||||| || | || | | || |||||| ||
Sbjct 1871390 CGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAACATC 1871331
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||||||||| |||
Sbjct 1871330 CAGAAGGAGTCTACTCTCCAC 1871310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181818437835676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |