Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq15 223 3e-53
>seq15
Length=714589
Score = 223 bits (246), Expect = 3e-53
Identities = 979/1539 (64%), Gaps = 43/1539 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || ||||| || || || ||||| | | ||| | ||| ||| | |||
Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| | || || | |||| || || |||||| || |
Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || |||| ||||| | || || || ||||||| || |||||||||
Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG----CGGG 147128
| | ||||| || |||||||| ||||||||||| | || |||| ||||
Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACC----CTGGGATACGGG 177820
Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188
| || || | || |||| || || || | || || | |||
Sbjct 177821 AGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAG 177880
Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248
|| ||| ||| ||||| || |||||| |||| || | ||||| || |||
Sbjct 177881 AGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTC 177940
Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308
| |||| | || || | |||||||| || | ||| || | ||| | ||||| ||
Sbjct 177941 GAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGG 178000
Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAATAA 147367
||| || ||||||||| || ||| | | || ||||||||| || || |
Sbjct 178001 TCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACTTCGATGA 178059
Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-A 147426
||||||| | ||| || ||||||| || | | | ||| |||| ||| ||| | |
Sbjct 178060 TCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACA 178119
Query 147427 GTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCC 147486
|| | ||| | || || | || ||| | ||| |||| ||||| |||||
Sbjct 178120 CACCGGCCTTGTAGTCG-ACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCG 178178
Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546
||| || | | |||||| ||| || || | ||||| |||| || |||
Sbjct 178179 ACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTA 178238
Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606
|| | || | ||| ||||| || || ||||| ||||| ||| | ||||| | ||
Sbjct 178239 CCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTA 178298
Query 147607 CCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGC 147663
|| |||||| |||| |||| || ||| | || | || || || || |
Sbjct 178299 CCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGC---TTTTGTGCGCGAACAGTC 178355
Query 147664 TGCCGATAGCGGCCCTCGTTTT------CGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717
| |||||||| ||| | |||| | |||||||| ||| || || ||
Sbjct 178356 TC------GCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCA 178409
Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777
|||||| |||||| ||||| || |||| | ||| ||||| || | ||| || |||
Sbjct 178410 CCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTG 178469
Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837
| | || || ||| || || || || | |||||| ||||| | |||||||| ||
Sbjct 178470 TCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCG 178529
Query 147838 TTGCAATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGATGTCGGCG 147894
| ||||| ||| ||| ||| || | ||| | || | ||| ||| |||
Sbjct 178530 CGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAAGCCAAAGACGTCAGCG 178586
Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACA 147951
||||| || || | ||||| ||| | |||||| ||||| || ||||||||||||
Sbjct 178587 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACA 178646
Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011
| ||| | ||||||| | || || | |||||| || ||| | | || |||||
Sbjct 178647 TAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTA 178706
Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCG 148071
||| | ||| | ||| || || | ||||||||| | |||||| |||||
Sbjct 178707 GTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCA 178766
Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCGTCGATGCTGT 148129
|| ||| || || || |||| | | | ||| ||| ||||||||||||||||
Sbjct 178767 GCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGT 178824
Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGA 148189
| | || | | | | | || || || ||||||| || | || ||||| ||
Sbjct 178825 CCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGA 178884
Query 148190 AAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAG 148249
| | || || ||||| || || | |||||| ||| | || ||||| || |
Sbjct 178885 ACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGG 178944
Query 148250 CGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTC 148309
| | || ||||| || ||||||||||| | || || |||||||||||||| ||||| |
Sbjct 178945 CCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGC 179004
Query 148310 GTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAA 148369
| ||||| || | ||| || ||| |||||| | ||||| || ||| ||||||
Sbjct 179005 GCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAGTGTCTTGAAACCAA 179064
Query 148370 AGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|| ||| ||| | || || | ||||| |||| ||||
Sbjct 179065 AGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCG 179103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476610270608160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |