Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15 223 3e-53 >seq15 Length=714589 Score = 223 bits (246), Expect = 3e-53 Identities = 979/1539 (64%), Gaps = 43/1539 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || || || ||||| | | ||| | ||| ||| | ||| Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| || || |||||| || | Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || |||| ||||| | || || || ||||||| || ||||||||| Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG----CGGG 147128 | | ||||| || |||||||| ||||||||||| | || |||| |||| Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACC----CTGGGATACGGG 177820 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 | || || | || |||| || || || | || || | ||| Sbjct 177821 AGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAG 177880 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || ||| ||| ||||| || |||||| |||| || | ||||| || ||| Sbjct 177881 AGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTC 177940 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | |||| | || || | |||||||| || | ||| || | ||| | ||||| || Sbjct 177941 GAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGG 178000 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAATAA 147367 ||| || ||||||||| || ||| | | || ||||||||| || || | Sbjct 178001 TCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACTTCGATGA 178059 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-A 147426 ||||||| | ||| || ||||||| || | | | ||| |||| ||| ||| | | Sbjct 178060 TCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACA 178119 Query 147427 GTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCC 147486 || | ||| | || || | || ||| | ||| |||| ||||| ||||| Sbjct 178120 CACCGGCCTTGTAGTCG-ACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCG 178178 Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 ||| || | | |||||| ||| || || | ||||| |||| || ||| Sbjct 178179 ACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTA 178238 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 || | || | ||| ||||| || || ||||| ||||| ||| | ||||| | || Sbjct 178239 CCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTA 178298 Query 147607 CCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGC 147663 || |||||| |||| |||| || ||| | || | || || || || | Sbjct 178299 CCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGC---TTTTGTGCGCGAACAGTC 178355 Query 147664 TGCCGATAGCGGCCCTCGTTTT------CGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 | |||||||| ||| | |||| | |||||||| ||| || || || Sbjct 178356 TC------GCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCA 178409 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 |||||| |||||| ||||| || |||| | ||| ||||| || | ||| || ||| Sbjct 178410 CCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTG 178469 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 | | || || ||| || || || || | |||||| ||||| | |||||||| || Sbjct 178470 TCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCG 178529 Query 147838 TTGCAATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGATGTCGGCG 147894 | ||||| ||| ||| ||| || | ||| | || | ||| ||| ||| Sbjct 178530 CGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAAGCCAAAGACGTCAGCG 178586 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACA 147951 ||||| || || | ||||| ||| | |||||| ||||| || |||||||||||| Sbjct 178587 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACA 178646 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | ||| | ||||||| | || || | |||||| || ||| | | || ||||| Sbjct 178647 TAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTA 178706 Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCG 148071 ||| | ||| | ||| || || | ||||||||| | |||||| ||||| Sbjct 178707 GTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCA 178766 Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCGTCGATGCTGT 148129 || ||| || || || |||| | | | ||| ||| |||||||||||||||| Sbjct 178767 GCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGT 178824 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGA 148189 | | || | | | | | || || || ||||||| || | || ||||| || Sbjct 178825 CCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGA 178884 Query 148190 AAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAG 148249 | | || || ||||| || || | |||||| ||| | || ||||| || | Sbjct 178885 ACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGG 178944 Query 148250 CGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTC 148309 | | || ||||| || ||||||||||| | || || |||||||||||||| ||||| | Sbjct 178945 CCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGC 179004 Query 148310 GTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAA 148369 | ||||| || | ||| || ||| |||||| | ||||| || ||| |||||| Sbjct 179005 GCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAGTGTCTTGAAACCAA 179064 Query 148370 AGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| ||| | || || | ||||| |||| |||| Sbjct 179065 AGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCG 179103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610270608160