Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4 206 4e-47
seq15 86.0 9e-11
>seq4
Length=2069545
Score = 206 bits (228), Expect = 4e-47
Identities = 356/508 (70%), Gaps = 22/508 (4%)
Strand=Plus/Minus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||| | |||||| || ||||||||||| || || |||||||| |||||| ||||||||
Sbjct 1053816 TGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTC 1053758
Query 1455839 CGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893
| ||| | ||||| | ||| | | ||| ||||||||| ||||||
Sbjct 1053757 CAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGCTTCTTCATCTCC 1053700
Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953
|||||||||||||| || ||| ||| ||||||||| || ||||||||| | | ||
Sbjct 1053699 CACGTCCTCGCCTTCTT-CGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCG 1053641
Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013
|| | || || ||| | || |||||||| | || ||||| ||||| ||| ||
Sbjct 1053640 ATTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGAT 1053581
Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG-- 1456071
|| ||| | ||||| || |||||||| || || |||||||| ||| | | || ||
Sbjct 1053580 GGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAA 1053521
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131
| | | ||| ||||||| ||||||||||| | || | | | || ||||||
Sbjct 1053520 GCAGCGCAGGT--ACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 1053463
Query 1456132 GACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188
|||||||| || |||||| ||||| | ||| ||| || ||| | || ||||
Sbjct 1053462 GACTGGGCCCTGCGATGGATCTCCGACAAGAA----CTCCACA-TTCGCCAACCGCCTCG 1053408
Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247
| | || ||||| || ||||| ||||| ||| || |||| | ||||||| ||||
Sbjct 1053407 TTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGC 1053348
Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||||||| || |||||||||||
Sbjct 1053347 TCAAGAAGCGCGGTCTGATGCCCGGTCT 1053320
Score = 123 bits (136), Expect = 4e-22
Identities = 232/332 (70%), Gaps = 8/332 (2%)
Strand=Plus/Minus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCC--GTCGACCGA 1456509
||||| ||||| ||||| || |||| | | | |||| |||||||| | | | |
Sbjct 1053281 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGT 1053222
Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569
| || | ||| |||||| || ||||||||||| ||| | ||||| | ||||| |
Sbjct 1053221 C-TGTCAGAGCT-ATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGC 1053164
Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629
|| || || || ||||||||||||| | | ||||||||||| ||||| | | ||
Sbjct 1053163 ACTACCATGCGCTCTGCTCGGCATGAACGCTA-CTCTCATGTGCCAATACATCG-AGTTC 1053106
Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689
||||| ||||| ||||| ||| |||||| | | ||| ||||| | |||||||
Sbjct 1053105 GTCGCTGACCGTCTGCTGTTGGCCCTCGGCAAC-GTCAAGGTCTACCACGCCACCAACCC 1053047
Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749
||| | |||||| || || || | || ||||||||||| |||||| |||||
Sbjct 1053046 CTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGT 1052987
Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780
||||| ||| |||||||| |||| ||||
Sbjct 1052986 CGGCGACTACCAGAAGGCCGGTGTCATGGCCA 1052955
>seq15
Length=714589
Score = 86.0 bits (94), Expect = 9e-11
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTT 262934
|| ||||||||||| | ||| || | | || |||| || ||||||||||| |
Sbjct 177767 CCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTGCGCAACTCGCT 177708
Query 262935 GCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTT 262994
|||| | || | |||||| || ||| | || || ||||| |||||||||| |||| ||
Sbjct 177707 GCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTT 177648
Query 262995 CGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053
||| | ||| ||| ||||||||| | ||||| || ||| | || || || || |
Sbjct 177647 CGA-GCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTG 177589
Query 263054 TCAACC 263059
||||||
Sbjct 177588 TCAACC 177583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177796153513272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |