Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 206 4e-47 seq15 86.0 9e-11 >seq4 Length=2069545 Score = 206 bits (228), Expect = 4e-47 Identities = 356/508 (70%), Gaps = 22/508 (4%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| | |||||| || ||||||||||| || || |||||||| |||||| |||||||| Sbjct 1053816 TGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTC 1053758 Query 1455839 CGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | ||| | ||||| | ||| | | ||| ||||||||| |||||| Sbjct 1053757 CAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGCTTCTTCATCTCC 1053700 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 |||||||||||||| || ||| ||| ||||||||| || ||||||||| | | || Sbjct 1053699 CACGTCCTCGCCTTCTT-CGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCG 1053641 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || | || || ||| | || |||||||| | || ||||| ||||| ||| || Sbjct 1053640 ATTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGAT 1053581 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG-- 1456071 || ||| | ||||| || |||||||| || || |||||||| ||| | | || || Sbjct 1053580 GGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAA 1053521 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | | | ||| ||||||| ||||||||||| | || | | | || |||||| Sbjct 1053520 GCAGCGCAGGT--ACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 1053463 Query 1456132 GACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 |||||||| || |||||| ||||| | ||| ||| || ||| | || |||| Sbjct 1053462 GACTGGGCCCTGCGATGGATCTCCGACAAGAA----CTCCACA-TTCGCCAACCGCCTCG 1053408 Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 | | || ||||| || ||||| ||||| ||| || |||| | ||||||| |||| Sbjct 1053407 TTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGC 1053348 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| || ||||||||||| Sbjct 1053347 TCAAGAAGCGCGGTCTGATGCCCGGTCT 1053320 Score = 123 bits (136), Expect = 4e-22 Identities = 232/332 (70%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCC--GTCGACCGA 1456509 ||||| ||||| ||||| || |||| | | | |||| |||||||| | | | | Sbjct 1053281 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGT 1053222 Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 | || | ||| |||||| || ||||||||||| ||| | ||||| | ||||| | Sbjct 1053221 C-TGTCAGAGCT-ATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGC 1053164 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || || || || ||||||||||||| | | ||||||||||| ||||| | | || Sbjct 1053163 ACTACCATGCGCTCTGCTCGGCATGAACGCTA-CTCTCATGTGCCAATACATCG-AGTTC 1053106 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 ||||| ||||| ||||| ||| |||||| | | ||| ||||| | ||||||| Sbjct 1053105 GTCGCTGACCGTCTGCTGTTGGCCCTCGGCAAC-GTCAAGGTCTACCACGCCACCAACCC 1053047 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 ||| | |||||| || || || | || ||||||||||| |||||| ||||| Sbjct 1053046 CTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGT 1052987 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780 ||||| ||| |||||||| |||| |||| Sbjct 1052986 CGGCGACTACCAGAAGGCCGGTGTCATGGCCA 1052955 >seq15 Length=714589 Score = 86.0 bits (94), Expect = 9e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTT 262934 || ||||||||||| | ||| || | | || |||| || ||||||||||| | Sbjct 177767 CCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTGCGCAACTCGCT 177708 Query 262935 GCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTT 262994 |||| | || | |||||| || ||| | || || ||||| |||||||||| |||| || Sbjct 177707 GCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTT 177648 Query 262995 CGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 ||| | ||| ||| ||||||||| | ||||| || ||| | || || || || | Sbjct 177647 CGA-GCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTG 177589 Query 263054 TCAACC 263059 |||||| Sbjct 177588 TCAACC 177583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796153513272