Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq15 152 5e-32
seq1 113 5e-20
>seq15
Length=714589
Score = 152 bits (168), Expect = 5e-32
Identities = 542/839 (65%), Gaps = 15/839 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
||||||||||| |||| || || || ||||||||||| || |||||||| ||| |
Sbjct 178999 CAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATTGAGAAGGCCATC 178940
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | |||||| || | || || ||||| ||||| || |||| |
Sbjct 178939 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 178880
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
||||||||| | || ||| |||| || || || | | |||| || ||||||
Sbjct 178879 GCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGC 178820
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802
||||||||||||||| |||| || | || || || || ||||| || |||||
Sbjct 178819 ATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 178761
Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862
|| || || ||||| || | | || || | || ||||| ||| |||||
Sbjct 178760 TATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGG 178701
Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922
|| | | | |||| | |||||| | || || | ||| ||| | | || |||| ||
Sbjct 178700 AACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGA 178641
Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979
|||||| || |||||| ||| ||| |||||||| | ||||| |||||||| ||
Sbjct 178640 CCAGGGTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGA 178581
Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGA 8039
| | | | | || | ||||| ||| || || || | || |||||
Sbjct 178580 CGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGA 178521
Query 8040 TCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACA 8099
||| |||| || ||||| | || || || || |||| ||| || || | ||| |
Sbjct 178520 TCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACAACGGCAA 178461
Query 8100 ATGGTCGCTCATGTGCCCCGATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158
||| | |||||||| ||||| || |||||| | | || |||||| | |||
Sbjct 178460 CTGGACACTCATGTG-CCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAAT 178402
Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG--TGAAAGC 8216
| || ||||| | ||||| || | | | | || || || || ||
Sbjct 178401 TCGAGGCCCTGTACGAGAGCTACGA----GAAGCAGAACAAGGGCCGCGAGACTGTTCGC 178346
Query 8217 GCGC--GACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274
|| | | || ||||||| | || || | ||| || |||| || | |||
Sbjct 178345 GCACAAAAGCTTTGGTACGCCATTCTTGAGGCGCAGACCGAGACTGGTAACCCCTTTATG 178286
Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334
|| ||||| |||||||||||| ||| ||||| || | ||| | || ||||| | ||
Sbjct 178285 CTTTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGC 178226
Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393
||| ||||| |||| ||||| |||||| || || || || || |||||||||||
Sbjct 178225 TCCAACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGTCGCCGTTTGCAA 178167
>seq1
Length=2771824
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || ||||| ||||| ||||||||||||||| | |||| | ||| |||
Sbjct 1871761 ACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1871820
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || || || || | || |||||||| || || ||||| || || |||||
Sbjct 1871821 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 1871880
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| ||| ||||| ||| | |||||||| || || || || ||||| ||||| ||
Sbjct 1871881 ATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTG 1871940
Query 134685 CCGGT 134689
|||||
Sbjct 1871941 CCGGT 1871945
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||||| || || || |||||||| || ||||||||||||
Sbjct 1872024 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 1872083
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || || || ||||| ||||| || || ||||| |||||||| || || ||
Sbjct 1872084 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 1872143
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | ||||| || || || ||
Sbjct 1872144 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 1872203
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
||||| || ||||| || |||||
Sbjct 1872204 TCGAGGGTGATGGTCTTTCCGGT 1872226
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || ||||| |||||||| |||||||||||| | || | ||| ||
Sbjct 1871533 ACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCC 1871592
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
| ||| || || || || || | |||||| || || || || || || || || |||||
Sbjct 1871593 AACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1871652
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | |||||| |||||||| ||||| || ||||| ||
Sbjct 1871653 ATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTG 1871712
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | || || ||||| ||||||||
Sbjct 1871713 CCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505397414473120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |