Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15 273 3e-68 seq4 113 6e-20 >seq15 Length=714589 Score = 273 bits (302), Expect = 3e-68 Identities = 1119/1741 (64%), Gaps = 35/1741 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGA 110421 |||||||||||||| || |||||||| || ||||| || || | |||||||||| Sbjct 177279 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 177337 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATG 110479 || |||| ||| || || | |||| || ||||| ||| |||| ||||||| Sbjct 177338 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACT--GGTCAATA 177395 Query 110480 AAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTAATTTCCCAAACTG 110537 || || || | || ||||| ||||||| | |||| | || ||||| || | Sbjct 177396 AAAGCACCACGGTCAGCGGCCATCTCAATGA--TTCTTCGCTGCGAGATCTCCCAGACGG 177453 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG--ATGGAACCCCC 110595 | || || |||| | || || ||||| | || || || |||| || ||||| || Sbjct 177454 TCTTGTAAAGTGTCTTTGTCTCCTCAGGGATGT-TGGGA-ATCCTGGCAATCGAACCTCC 177511 Query 110596 CGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 | | || | | |||||| | || ||||| ||||| || | ||||| || Sbjct 177512 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTT 177571 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 || | |||||||| |||||||| |||||| | | |||||||| Sbjct 177572 GAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTT 177631 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | |||||||| || ||||| || || || |||| || |||| |||||||| ||||| Sbjct 177632 GGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGG 177691 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||| ||||| || | || ||| || | ||| | ||| || ||||| ||| Sbjct 177692 CATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGA 177751 Query 110836 ATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 ||||||| || | || | || | || |||| |||| || |||| || | || Sbjct 177752 CGCCCAGTCCCAGAGGTCAG-TAGGCGTGACATTCC-ACATATCGTACTGGAGGATACCC 177809 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 ||||| ||||||| || || |||| | || | ||| | | | || | || || Sbjct 177810 TGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTGCGATGTCGCAT 177869 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 | || | || || || ||||| |||||||| | || | || ||| ||| Sbjct 177870 GAGGAAGTGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCT 177929 Query 111014 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 111073 || ||||| || || | |||| | || |||| || ||||||||||||||| Sbjct 177930 TCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCC 177989 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | ||| || |||| ||| || | || || || || || || || || Sbjct 177990 ATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTG 178049 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 || |||| ||| | || ||| |||| | ||||| ||| || || || | Sbjct 178050 ACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTG 178109 Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 | ||||| | | || | | |||| | || ||||| | || ||||| ||| Sbjct 178110 AAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTG 178169 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 ||||| || |||||| | | |||||||| | ||| || || || |||||||| || Sbjct 178170 CAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTG 178229 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || || | ||||| ||||| ||||| |||||| || |||||||| ||||| Sbjct 178230 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATA 178289 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGT 111433 |||| | || ||||| ||||| | | ||||| || | ||||| | || | Sbjct 178290 AAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGA 178349 Query 111434 ACAATGGCGTTGGCCCGTCC-CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 ||| | || ||||| | || | |||||| | ||| ||||| || || || || Sbjct 178350 ACAGTCTCGC-GGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTC 178408 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | |||| ||| || || || || || || | || | ||| | || Sbjct 178409 ACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTT 178468 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 || | || ||||||||||| ||||| ||||||||||||| | |||||||| | | Sbjct 178469 GTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGC 178528 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 || |||| || | || ||||| || | |||||||| | | || || ||||| Sbjct 178529 GCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTG 178588 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 111726 ||||||||| || |||| |||| | || | | ||| ||| | || | || Sbjct 178589 CCATGGCTCGAGGTAGATGGCGAAGGCACC---TGGGCGCTTGTTGCCACCCTGGTCGAC 178645 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 |||||| || ||| ||| |||| || ||||| ||||| | ||| | ||| || || Sbjct 178646 ATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTT 178705 Query 111787 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || |||| || ||| | | || | | || | || | |||||||| Sbjct 178706 AGTGCCACCGATGTATGAG--CCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCG 178763 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| ||| ||||| |||||| | | || || | || || |||| ||| | Sbjct 178764 CCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTG 178823 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 |||||||| || |||| |||||||| ||||| || ||| |||||| || || ||| Sbjct 178824 TCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTG 178883 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 112023 || | || || | ||||| |||| ||| ||| ||||| | |||||| ||||| | Sbjct 178884 AACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGAT 178942 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | |||||||| || ||||| ||||| | || || ||||||| ||||| ||||| Sbjct 178943 GGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002 Query 112084 G 112084 | Sbjct 179003 G 179003 >seq4 Length=2069545 Score = 113 bits (124), Expect = 6e-20 Identities = 300/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| ||| | || |||||| ||||| Sbjct 1052978 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTCCATG 1053037 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACC---CCAACTTGTTTGAG 122483 ||||| || || || | |||| | | || || || ||||| || Sbjct 1053038 AAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC-------AG 1053090 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 ||||| || | || |||| ||||| | | |||| || |||||| |||| || Sbjct 1053091 CAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAG 1053150 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 ||||| |||||||| | |||| | | ||||||||| || || || | | ||| Sbjct 1053151 AGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGAT 1053210 Query 122604 GGCGTGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 || || || || | |||| | || || || |||||| ||| | Sbjct 1053211 AGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGA-GAAGAGAAGGCAGGCGA 1053269 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| | ||||| || ||||| || || || || ||||| |||||| |||| Sbjct 1053270 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCA 1053329 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | ||||| |||||||| | ||| | || | | ||| || ||| |||||||||||||| Sbjct 1053330 TCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCT 1053389 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||| || || |||| ||||| | |||||| Sbjct 1053390 CAACAGCGGCGAATGCAACGAGGCGGTTGGCGAA 1053423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030775337600