Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq15 271 9e-68 seq4 93.3 5e-14 >seq15 Length=714589 Score = 271 bits (300), Expect = 9e-68 Identities = 929/1431 (65%), Gaps = 29/1431 (2%) Strand=Plus/Plus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| |||||||| |||||| || | |||||| |||| ||||||||| Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||| ||||| |||| || || | |||||||| || ||||||||||| ||| Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAG 118322 || || ||| || | ||| | || ||| ||||| |||| ||||||| || Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764 Query 118323 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 118382 | | | | | | ||||||||| ||||||||||||| ||||| | || ||| Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 177824 Query 118383 CCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGG 118439 || || | |||| || || | ||| |||| || | ||| | | ||| Sbjct 177825 CCTTCGTAGGTCTTGTAAGGAC---CAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGA 177881 Query 118440 GCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 118499 || || || || || || ||||| || | || | ||| || ||||| || || Sbjct 177882 GCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCG 177941 Query 118500 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 118559 || | || ||| | || |||| || |||||||| ||||| | || || || Sbjct 177942 AAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGT 178001 Query 118560 CGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAA 118617 || || | | || || | || || || || || || || ||||| | Sbjct 178002 CGGTGGCGGAAGTT--GCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGA 178059 Query 118618 CCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-A 118676 | | || | || ||||||||| | ||||| ||| || ||||| | | | ||||| | Sbjct 178060 TCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACA 178119 Query 118677 CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 118736 | || | || | | |||| | ||| ||||| | || |||| || || || | | Sbjct 178120 CACCG-GCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCG 178178 Query 118737 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTG 118796 |||||| | |||||||||| | ||| || ||||||||||| || || ||||| Sbjct 178179 ACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTA 178238 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 || | |||||| || || ||| ||| || || |||||||||||||| | || | Sbjct 178239 CCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTA 178298 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCG 118916 || ||||| || || | || ||||| || | ||| | | || | ||||| || Sbjct 178299 CCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCG 178358 Query 118917 TTG-GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC 118975 | || | | ||| |||||| | ||| ||||| || || |||||||| | | Sbjct 178359 CGGCCCTTGTTCTGCTT-CTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGAC 178417 Query 118976 CTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAAC 119035 || | ||| || || || | ||||| | ||| | ||| | || || | || Sbjct 178418 ATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGAC 178477 Query 119036 CCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC 119095 ||||||||||||||||| || ||||| || || |||||||||| ||| ||| | || Sbjct 178478 ACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTC 178537 Query 119096 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 119155 || | || || || |||| || | ||| | | || || |||||||| || || Sbjct 178538 CTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTC 178597 Query 119156 CAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGC 119209 ||||| | |||| | | ||| | || ||| |||||| ||||| | || Sbjct 178598 GAGGTAGATGGCGA-AGGCACCT--GGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGC 178654 Query 119210 AGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCC 119268 |||| ||| ||||||| ||||| ||||||| ||| | ||| || || || || || Sbjct 178655 AGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACC 178714 Query 119269 GA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 119327 || || ||| | | | || | | ||| | || | |||||||| || || | Sbjct 178715 GATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTC 178772 Query 119328 TTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 119387 || ||||| ||| || | |||| || |||| || || ||||| ||| |||| Sbjct 178773 TTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTC 178832 Query 119388 TTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTT 119447 | ||||||||||||| ||||||||| || ||||| || |||||||| | || Sbjct 178833 ATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTC 178892 Query 119448 GGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGG 119506 || | ||||| |||| ||| ||| ||||| | |||||||||||| | | | Sbjct 178893 GGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTC 178951 Query 119507 AATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 |||||| || |||||||| || | | || ||||| | ||||| ||| || Sbjct 178952 AATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002 >seq4 Length=2069545 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||||||||||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 1053284 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 1053343 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 1053344 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 1053403 Query 130154 GCAAAGAGACG 130164 |||| ||| || Sbjct 1053404 GCAACGAGGCG 1053414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433994051360