Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq15 271 9e-68
seq4 93.3 5e-14
>seq15
Length=714589
Score = 271 bits (300), Expect = 9e-68
Identities = 929/1431 (65%), Gaps = 29/1431 (2%)
Strand=Plus/Plus
Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202
|||||||| |||||||| |||||| || | |||||| |||| |||||||||
Sbjct 177585 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 177644
Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262
|| |||||||| ||||| |||| || || | |||||||| || ||||||||||| |||
Sbjct 177645 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 177704
Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAG 118322
|| || ||| || | ||| | || ||| ||||| |||| ||||||| ||
Sbjct 177705 AGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 177764
Query 118323 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 118382
| | | | | | ||||||||| ||||||||||||| ||||| | || |||
Sbjct 177765 AGGTCAGTAGGCGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 177824
Query 118383 CCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGG 118439
|| || | |||| || || | ||| |||| || | ||| | | |||
Sbjct 177825 CCTTCGTAGGTCTTGTAAGGAC---CAAGCTCCTTTGCGATGTCGCATGAGGAAGTGAGA 177881
Query 118440 GCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 118499
|| || || || || || ||||| || | || | ||| || ||||| || ||
Sbjct 177882 GCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCG 177941
Query 118500 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 118559
|| | || ||| | || |||| || |||||||| ||||| | || || ||
Sbjct 177942 AAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGATGGGT 178001
Query 118560 CGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAA 118617
|| || | | || || | || || || || || || || ||||| |
Sbjct 178002 CGGTGGCGGAAGTT--GCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGATGA 178059
Query 118618 CCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-A 118676
| | || | || ||||||||| | ||||| ||| || ||||| | | | ||||| |
Sbjct 178060 TCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACA 178119
Query 118677 CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 118736
| || | || | | |||| | ||| ||||| | || |||| || || || | |
Sbjct 178120 CACCG-GCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACGGCG 178178
Query 118737 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTG 118796
|||||| | |||||||||| | ||| || ||||||||||| || || |||||
Sbjct 178179 ACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTGGAGCTGCGGATGGTA 178238
Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856
|| | |||||| || || ||| ||| || || |||||||||||||| | || |
Sbjct 178239 CCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTA 178298
Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCG 118916
|| ||||| || || | || ||||| || | ||| | | || | ||||| ||
Sbjct 178299 CCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCG 178358
Query 118917 TTG-GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC 118975
| || | | ||| |||||| | ||| ||||| || || |||||||| | |
Sbjct 178359 CGGCCCTTGTTCTGCTT-CTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGAC 178417
Query 118976 CTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAAC 119035
|| | ||| || || || | ||||| | ||| | ||| | || || | ||
Sbjct 178418 ATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGAC 178477
Query 119036 CCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC 119095
||||||||||||||||| || ||||| || || |||||||||| ||| ||| | ||
Sbjct 178478 ACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTC 178537
Query 119096 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 119155
|| | || || || |||| || | ||| | | || || |||||||| || ||
Sbjct 178538 CTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTC 178597
Query 119156 CAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGC 119209
||||| | |||| | | ||| | || ||| |||||| ||||| | ||
Sbjct 178598 GAGGTAGATGGCGA-AGGCACCT--GGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGC 178654
Query 119210 AGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCC 119268
|||| ||| ||||||| ||||| ||||||| ||| | ||| || || || || ||
Sbjct 178655 AGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACC 178714
Query 119269 GA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 119327
|| || ||| | | | || | | ||| | || | |||||||| || || |
Sbjct 178715 GATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTC 178772
Query 119328 TTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 119387
|| ||||| ||| || | |||| || |||| || || ||||| ||| ||||
Sbjct 178773 TTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTC 178832
Query 119388 TTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTT 119447
| ||||||||||||| ||||||||| || ||||| || |||||||| | ||
Sbjct 178833 ATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTC 178892
Query 119448 GGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGG 119506
|| | ||||| |||| ||| ||| ||||| | |||||||||||| | | |
Sbjct 178893 GGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTC 178951
Query 119507 AATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557
|||||| || |||||||| || | | || ||||| | ||||| ||| ||
Sbjct 178952 AATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 179002
>seq4
Length=2069545
Score = 93.3 bits (102), Expect = 5e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
|||||||||||||||||||| || || ||||| ||||| ||||| ||||| ||||||
Sbjct 1053284 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 1053343
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|| | |||||| || | || || || ||||||||| ||||| ||| |||||
Sbjct 1053344 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 1053403
Query 130154 GCAAAGAGACG 130164
|||| ||| ||
Sbjct 1053404 GCAACGAGGCG 1053414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618433994051360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |