Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq15 297 2e-75 seq4 116 4e-21 >seq15 Length=714589 Score = 297 bits (328), Expect = 2e-75 Identities = 1127/1744 (65%), Gaps = 41/1744 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||| ||||||| || || | || ||||| || || |||||||| | Sbjct 179003 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATTGAGAAGGC 178944 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | | Sbjct 178943 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 178885 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || |||||| ||| |||||||| |||||||| |||| || ||||||| Sbjct 178884 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 178825 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| |||| || || | || || | | |||||| ||||| ||| |||| Sbjct 178824 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 178765 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | |||||||| | || | || | | || | | ||| || |||| || || Sbjct 178764 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 178707 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || ||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 178706 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 178647 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||| | || | ||| ||| | | || | |||| |||| || |||||||| Sbjct 178646 TGTCGACCAGGGTGGCAACAAGCGCCCA---GGTGCCTTCGCCATCTACCTCGAGCCATG 178590 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CG 104689 |||||| || || | | |||||||| |||| ||||| || | ||||||| || Sbjct 178589 GCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 178530 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || | ||||||||||||| ||| || |||||||| || |||||||||||| | || | Sbjct 178529 CGCT--CGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAA 178472 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 || | ||||| ||| | ||| | || || || || ||||| ||| |||||| | Sbjct 178471 GACAACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 178412 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGA 104867 ||||| || || || ||||| ||| | ||||| |||| || | |||| | | || Sbjct 178411 GGTGAAGAATTCGAGGCCCTGTACGAGAGCTACGA-GAAGCAGAACAAGGGCCGC-GAGA 178354 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | || | || | | ||| | || ||||| || | || ||||||||||||| | Sbjct 178353 CTGTTCGCGCACAAAAGCTTTGGTACGCCATTCTTGAGGCGCAGACCGAGACTGGTAACC 178294 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | ||||||||||| ||||| || |||| ||||| || || ||||| | ||| | Sbjct 178293 CCTTTATGCTTTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCA 178234 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || ||||| | || || || || |||| | || | |||||| || | Sbjct 178233 TCCGCAGCTCCAACTTGTGCACTGAGATTGTGGAGTACACTGCTCCTGATGAGGTCGCCG 178174 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 105106 | || ||| | || || | || || || | ||| || | || || | ||| Sbjct 178173 TTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGTGTGTTT 178115 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | || ||||||||||| || || ||||||| ||| | |||| | || Sbjct 178114 GACTTCAAGAAGCTCCACGAAGTCACACAAGTTGTCACCCGCAACTTGAACAAGATCATC 178055 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 || || ||||| || || || || || | | ||||| || || Sbjct 178054 GAAGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATC 177995 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 ||| | |||||||| ||||| || |||| ||| | |||| | || || || Sbjct 177994 GGTATGGGTGTTCAAGGTCTTGCTGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCA 177935 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 |||||||| ||| | |||| | || ||||||||||| || || || ||||| Sbjct 177934 GACGAAGCTAAGAAGCTCAACATCCAAATCTTTGAGACCATCTACCATGCTGCTCTCACT 177875 Query 105347 GCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 | | || | ||| ||| |||||| || | |||| || || ||||| | Sbjct 177874 TCCTCATGCGACATCGCAAAGGAGCTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTA 177815 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACT 105464 || || || | || || | ||||||| |||| || | || | || | || |||| Sbjct 177814 TCCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACGCCTA-CTGACCTCTGGGACT 177757 Query 105465 GGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTC 105524 ||| |||| ||||| || ||| | ||| | || ||| || ||||| || | Sbjct 177756 GGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTGCGCAACTCGCTGCTCATTGCAC 177697 Query 105525 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 105584 | |||||||| |||||||| |||| || |||| || || || ||||| || || |||| Sbjct 177696 CCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACA 177637 Query 105585 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 105643 | | ||||||||| | | |||||| || ||||| | |||||||| ||| Sbjct 177636 CCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATG 177579 Query 105644 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 105702 | | | ||||| || || ||||| ||||| || | |||||| | | || | Sbjct 177578 GTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCAT 177519 Query 105703 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTA 105762 | || ||||| ||| | ||| | || || | || | |||| | || Sbjct 177518 CGCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACACTTTA 177459 Query 105763 CCGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 105820 | || || ||||| ||| | |||| | ||||||| |||||||| || |||||| Sbjct 177458 CAAGACCGTCTGGGAGATCTCGCAGCGAAGAA--TCATTGAGATGGCCGCTGACCGTGGT 177401 Query 105821 CGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCA 105878 || ||||| | |||| ||| |||| || |||| | || || ||| || Sbjct 177400 GCTTTTATTGACC--AGTCTCAGTCGCTGAACATCCACATGAAGGAGCCTACTATGGGCA 177343 Query 105879 AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938 || || ||||||||||| | | |||||| |||||||| || || ||||| || | Sbjct 177342 AGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACTGGCATGTACTATC 177283 Query 105939 TCCG 105942 |||| Sbjct 177282 TCCG 177279 >seq4 Length=2069545 Score = 116 bits (128), Expect = 4e-21 Identities = 290/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 || ||| | ||||| || ||||||||||||||||||| ||||| ||| | | || Sbjct 1053414 CGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATC 1053355 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| Sbjct 1053354 TTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCC 1053295 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 94986 ||||||||||| | ||| || || || || ||| | | | || Sbjct 1053294 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAG 1053235 Query 94987 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTC 95046 || | | ||| || | |||| | | |||||||| ||||||||| | | ||| Sbjct 1053234 CCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTC 1053175 Query 95047 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATAT 95106 | || || || ||||||||||| |||| ||||| || |||| |||| Sbjct 1053174 TTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATAC 1053115 Query 95107 ATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTC 95165 || |||| || |||| | || || | || || | || | | | || | Sbjct 1053114 ATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGC 1053056 Query 95166 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 95225 || || || || |||||||||||||||||| || | || ||||| ||||||||||| Sbjct 1053055 CACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGA 1052996 Query 95226 AAAGAGGGTTGGGGACTA 95243 ||| | || || ||||| Sbjct 1052995 GAAGCGCGTCGGCGACTA 1052978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259662641440