Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 1e-25
>seq1
Length=2771824
Score = 132 bits (146), Expect = 1e-25
Identities = 155/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || ||||||||||| || || || || || || || | ||||| || ||||| |
Sbjct 1871307 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 1871365
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
| || || ||||| || || ||||| ||||| |||||||| || || || || ||||| |
Sbjct 1871366 GCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGA 1871425
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| || | |||||||| || |||| || | || ||||| | ||||| |||||||
Sbjct 1871426 TCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTC 1871485
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| || || || ||||| ||||||||
Sbjct 1871486 CGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 131 bits (144), Expect = 5e-25
Identities = 708/1122 (63%), Gaps = 21/1122 (2%)
Strand=Plus/Plus
Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590
|||||| || || ||||| ||||| || || |||| ||||| ||| || | || |
Sbjct 2268556 ACCCGAGGAGATCTCATCTATGGTCTTGACCAAGATGAGGGAAACTGCCGAGTCCTACCT 2268615
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
|||| || || | | ||||| | ||||| || || || || || || | || ||
Sbjct 2268616 CGGTGGCACCGTTAACAACGCTGTCGTCACTGTTCCCGCATACTTCAACGACTCGCAACG 2268675
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
| || || ||||||||||| |||||| || | || || || | || || || ||
Sbjct 2268676 TCAGGCTACCAAAGATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGA 2268735
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770
|| ||||| || || || || || || ||||| || | || || || || |
Sbjct 2268736 GCCTACTGCCGCTGCCATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGT 2268795
Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830
||||| || || || ||||||||||| || ||||| || || | || | || |||||
Sbjct 2268796 CCTTATCTTCGACTTGGGTGGTGGTACCTTCGATGTCTCCCTCTTGACCATCGAGGAGGG 2268855
Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890
|| || || || || | ||||| ||||| || || | ||||| || || || || ||
Sbjct 2268856 TATCTTCGAGGTCAAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAA 2268915
Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA 349950
|||||||| || || || || || |||||| |||| | || | | ||
Sbjct 2268916 CCGTCTCGTCAACCACTTCACCAACGAGTTCAAGCGT-AAGC-ACAAGAAGGACTTGACC 2268973
Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008
| || || | || | ||||| || |||| || || || | || ||||| | |
Sbjct 2268974 TCCAACGCTCGTGCTCTCCGTCGTCTCCGAACCGCTTGCGAGAGGGCCAAGCGCACTCTG 2269033
Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068
|| ||| | | || ||||| || || || || || || || || | || ||||
Sbjct 2269034 TCCTCTTCCGCTCAGACCTCCATCGAGATCGACTCCCTGTACGAGGGTATCGACTTCTAC 2269093
Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128
| || || |||||||| || ||||| | || ||| || || | | || |||
Sbjct 2269094 ACCAGCATCACCCGTGCTCGTTTCGAAGAGCTCTGCCAGGACCTCTTCCGCTCCACCATG 2269153
Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGT 350187
|| || || || || | ||||| || || | | | || | | | || |
Sbjct 2269154 GAGCCCGTCGAGCGTGTCCTCCGCGATGCTAAGATCGACAAGTCCTCCG-TCCACGAGAT 2269212
Query 350188 AGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTT 350247
|| || || ||||| || || ||||| || || || || || | | || || || ||
Sbjct 2269213 TGTCTTGGTCGGTGGATCCACCCGTATCCCCAAGGTCCAGAAGATGGTCTCCGACTTCTT 2269272
Query 350248 TAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGC 350307
|| ||||| || || | || || || || ||||| ||||| || || ||||| ||
Sbjct 2269273 CAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTCGCCTACGGTGCCGC 2269332
Query 350308 TGTTCAGGCATCTATTTTATCTGG----AAAT-----AAGAGTTCTAAAATTGATGATCT 350358
|| ||||| |||| | ||||| | || ||| |||| || ||||
Sbjct 2269333 CGTCCAGGCTGCTATCCTGTCTGGTGACACATCCTCCAAG---TCTACCTCCGA-GATC- 2269387
Query 350359 ATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGAC 350418
| || || || || | || ||||| | || | || || |||||| || |||||
Sbjct 2269388 -CTGCTTCTCGACGTCGCGCCGCTTTCCATCGGTATCGAGACCGCTGGTGGTGTCATGAC 2269446
Query 350419 TGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATT 350478
|| ||| || | || | || | || || || |||||| | || || || ||
Sbjct 2269447 TGCTCTCATCAAGCGCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTT 2269506
Query 350479 TGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAA 350538
|| || ||||| | || || || || | || ||||| ||||||||||| ||
Sbjct 2269507 CAGCGACAACCAGCCCGGTGTGCTTATCCAGGTCTACGAGGGTGAGCGTGCTCGCACCAA 2269566
Query 350539 AGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGT 350598
|| || || || ||| | || || | | || ||||| ||| | || ||
Sbjct 2269567 GGACAACAACCTGCTCGGAAAGTTCGAGCTTACCGGTATCCCACCTGCTCCTCGTGGTGT 2269626
Query 350599 TCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640
||| ||||| || ||| | |||||| |||| | || |||||
Sbjct 2269627 TCCCCAGATCGAGGTCACCTTCGATGTTGACGCCAACGGTAT 2269668
Score = 114 bits (126), Expect = 4e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || ||||| || || || ||||| || ||||| || |
Sbjct 1871735 TTTGCATACCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGT 1871794
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || ||||| ||||| || ||||| || ||||||||||
Sbjct 1871795 AGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGAT 1871854
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || || || || || || || || | || || || || || | || ||||
Sbjct 1871855 CCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATG 1871914
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||||| ||||| || | ||||| |||||
Sbjct 1871915 ACTCAACCTCAAGAGTGATGGTCTTGCCGGT 1871945
Score = 104 bits (114), Expect = 7e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||| ||||| | | || || ||||| || ||||| || || || || || || ||
Sbjct 1872020 CATACCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTC 1872079
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || || || ||||| | || ||||| || ||
Sbjct 1872080 GGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 1872139
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685
||||| || || || ||||| || || ||| || ||||| || || | ||||| | |
Sbjct 1872140 GGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCAGAAGACT 1872198
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
|||| || || || | ||||||||||| | |||
Sbjct 1872199 CAACCTCGAGGGTGATGGTCTTTCCGGTGACTGT 1872232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515251371385268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |