Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq15 237 2e-57
seq1 116 4e-21
>seq15
Length=714589
Score = 237 bits (262), Expect = 2e-57
Identities = 385/544 (71%), Gaps = 10/544 (2%)
Strand=Plus/Minus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||| ||||||| ||| ||||||||||| || |||||| |||| || ||||||||
Sbjct 178939 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 178880
Query 53303 GCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
|| || || |||||| || |||||| |||||||| | | |||||||| |||
Sbjct 178879 GCGGGCACACCATCACCA-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAG 178821
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
||||||||||| ||||| || |||||| ||||| ||||||||| | || ||
Sbjct 178820 CATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 178761
Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
||| || || || ||| | | | ||||| | ||| || ||| || || ||||
Sbjct 178760 TATTGGCCTCAACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACG 178702
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
| | | || || | || |||||||| || | ||||||||| || || || |||
Sbjct 178701 GAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCG 178642
Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600
|||||||||| |||||| || | |||||||||||||||||||| |||||||| |
Sbjct 178641 ACCAGGGTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTG 178582
Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660
|| | | | || || || ||||| ||| || || | || ||| | ||| || |
Sbjct 178581 ACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCG 178522
Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACG 53717
| || || ||| || ||||||||||| |||||||||||| || ||| ||| |||
Sbjct 178521 ATCTCTTCTAC-GCCCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTCCAAGACAACG 178465
Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777
| ||| || |||||||||||||||||||| |||||| | |||||||||||| |
Sbjct 178464 GCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAG 178405
Query 53778 AGTT 53781
| ||
Sbjct 178404 AATT 178401
Score = 129 bits (142), Expect = 6e-25
Identities = 303/448 (68%), Gaps = 11/448 (2%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||||| |||||| | || || |||||||| || || || | ||||| ||||||||
Sbjct 177718 CGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAAC 177659
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||| ||||| ||| || ||||||
Sbjct 177658 AACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAG 177599
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| | ||||| | |||||||||| | || |||| |
Sbjct 177598 TTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAG 177539
Query 55664 CAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATTCC 55719
| || |||| ||| | || || || || || | |||| || | | || ||
Sbjct 177538 AACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCGATTGCCAGGATTCCCAACATCCC 177480
Query 55720 TCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAG--AAGAGTCTGAT 55776
| | | ||| || | ||||| ||| || |||||||| | ||| |||| || ||
Sbjct 177479 TGAG-GAGACAAAGACACTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGAATC--AT 177423
Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836
||| ||| ||||| |||||||| | || |||||||| ||||| ||||||||| |||
Sbjct 177422 TGAGATGGCCGCTGACCGTGGTGCTTTTATTGACCAGTCTCAGTCGCTGAACATCCACAT 177363
Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896
| || | ||| | ||| |||| | | || ||||||||| || |||||| || ||
Sbjct 177362 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 177303
Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924
|||||| || ||||||||||| || |||
Sbjct 177302 CAAGACTGGCATGTACTATCTCCGTACC 177275
>seq1
Length=2771824
Score = 116 bits (128), Expect = 4e-21
Identities = 304/449 (68%), Gaps = 16/449 (4%)
Strand=Plus/Plus
Query 117152 CCAGTTCCGATACC-CTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAA 117210
||||| || ||||| ||| | ||| || || |||||| | |||| | || || | |
Sbjct 2352000 CCAGTACCAATACCGCTC-GAACCGTTGATGAGAATCGTGGGCAGAATCGGGACAAACAT 2352058
Query 117211 CTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTG-TCACTCG 117269
||| ||||| | || ||||||| | | ||||||| |||| |||| ||| |||
Sbjct 2352059 CTCGGGCTCGATCTTGTGACCGTCCGACTCGCCGTACTTCAGCA----ATTGGTCA-TCG 2352113
Query 117270 -GATCGAATATG-TTCTTGGTCC--ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTT 117325
| || | | ||| | || | | || | ||||| ||| |||| || | | |||
Sbjct 2352114 TGGGCGTGGAAGATTCGTCGTGCGAATGGCGAAAGGCGTGTGTAAATATACCTGGCGCTG 2352173
Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385
|||||||| ||||| ||||||| |||||| | ||||| ||||| | | |||
Sbjct 2352174 GCAGCATCGGCACCACCCTTGAGACGCGAACCGAAGTTACCACTGGGCTCAAGGTAGTTG 2352233
Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445
| |||||||| || |||||||| || || | ||||||||| || ||||| | ||
Sbjct 2352234 ATGTTGTTGGTACCGACAAAGTTCTGCGCAAGGTTGACAATAGTTCCTTGCATAGAAGCT 2352293
Query 117446 TCACCATGGTGATACGCCGTCTGCTCC-GCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504
||||| || ||| | || | ||| | ||| | || || |||| | | ||||| |
Sbjct 2352294 TCACCGTGAGCATAGTCGGTG-GATCCAGAGACGGAACCTGCAAGCTCAACGACCTTGAC 2352352
Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564
||| | | | ||| | ||| |||| ||| | ||||| ||||||| ||||||||
Sbjct 2352353 ATCTTTCTTGATGTTTCGCCTGAAACAGGTATACAGAACCTTTCGCTGACCGGGCTTCAG 2352412
Query 117565 ACCATCCGCCACGTGAGGG-ATCGAACGC 117592
|||||| | ||| ||||| ||||| |||
Sbjct 2352413 ACCATCGACAACG-GAGGGAATCGATCGC 2352440
Score = 107 bits (118), Expect = 2e-18
Identities = 137/189 (72%), Gaps = 6/189 (3%)
Strand=Plus/Plus
Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055
||||||||||||||||||||||| |||| |||| ||||||| ||| |
Sbjct 2353964 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 2354023
Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115
| || |||||| | |||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 2354024 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCGTTACGACC 2354083
Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|||||| || ||||| | ||||| |||||||||| || | |||||| ||||||||
Sbjct 2354084 ACCGGTGACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 2354143
Query 119176 GAGCTCGGG 119184
| ||| ||
Sbjct 2354144 CATCTCTGG 2354152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214932928800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |