Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 237 2e-57 seq1 116 4e-21 >seq15 Length=714589 Score = 237 bits (262), Expect = 2e-57 Identities = 385/544 (71%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||||||| ||| ||||||||||| || |||||| |||| || |||||||| Sbjct 178939 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 178880 Query 53303 GCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || |||||| || |||||| |||||||| | | |||||||| ||| Sbjct 178879 GCGGGCACACCATCACCA-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAG 178821 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||||||||| ||||| || |||||| ||||| ||||||||| | || || Sbjct 178820 CATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 178761 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||| || || || ||| | | | ||||| | ||| || ||| || || |||| Sbjct 178760 TATTGGCCTCAACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACG 178702 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | | || || | || |||||||| || | ||||||||| || || || ||| Sbjct 178701 GAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCG 178642 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 |||||||||| |||||| || | |||||||||||||||||||| |||||||| | Sbjct 178641 ACCAGGGTGGCAACAAGCGCCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTG 178582 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 || | | | || || || ||||| ||| || || | || ||| | ||| || | Sbjct 178581 ACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCG 178522 Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACG 53717 | || || ||| || ||||||||||| |||||||||||| || ||| ||| ||| Sbjct 178521 ATCTCTTCTAC-GCCCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTCCAAGACAACG 178465 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777 | ||| || |||||||||||||||||||| |||||| | |||||||||||| | Sbjct 178464 GCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAG 178405 Query 53778 AGTT 53781 | || Sbjct 178404 AATT 178401 Score = 129 bits (142), Expect = 6e-25 Identities = 303/448 (68%), Gaps = 11/448 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||||| | || || |||||||| || || || | ||||| |||||||| Sbjct 177718 CGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAAC 177659 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||| ||||| ||| || |||||| Sbjct 177658 AACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAG 177599 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| | |||||||||| | || |||| | Sbjct 177598 TTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAG 177539 Query 55664 CAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATTCC 55719 | || |||| ||| | || || || || || | |||| || | | || || Sbjct 177538 AACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCGATTGCCAGGATTCCCAACATCCC 177480 Query 55720 TCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAG--AAGAGTCTGAT 55776 | | | ||| || | ||||| ||| || |||||||| | ||| |||| || || Sbjct 177479 TGAG-GAGACAAAGACACTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGAATC--AT 177423 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 ||| ||| ||||| |||||||| | || |||||||| ||||| ||||||||| ||| Sbjct 177422 TGAGATGGCCGCTGACCGTGGTGCTTTTATTGACCAGTCTCAGTCGCTGAACATCCACAT 177363 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | || | ||| | ||| |||| | | || ||||||||| || |||||| || || Sbjct 177362 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 177303 Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924 |||||| || ||||||||||| || ||| Sbjct 177302 CAAGACTGGCATGTACTATCTCCGTACC 177275 >seq1 Length=2771824 Score = 116 bits (128), Expect = 4e-21 Identities = 304/449 (68%), Gaps = 16/449 (4%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACC-CTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAA 117210 ||||| || ||||| ||| | ||| || || |||||| | |||| | || || | | Sbjct 2352000 CCAGTACCAATACCGCTC-GAACCGTTGATGAGAATCGTGGGCAGAATCGGGACAAACAT 2352058 Query 117211 CTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTG-TCACTCG 117269 ||| ||||| | || ||||||| | | ||||||| |||| |||| ||| ||| Sbjct 2352059 CTCGGGCTCGATCTTGTGACCGTCCGACTCGCCGTACTTCAGCA----ATTGGTCA-TCG 2352113 Query 117270 -GATCGAATATG-TTCTTGGTCC--ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTT 117325 | || | | ||| | || | | || | ||||| ||| |||| || | | ||| Sbjct 2352114 TGGGCGTGGAAGATTCGTCGTGCGAATGGCGAAAGGCGTGTGTAAATATACCTGGCGCTG 2352173 Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 |||||||| ||||| ||||||| |||||| | ||||| ||||| | | ||| Sbjct 2352174 GCAGCATCGGCACCACCCTTGAGACGCGAACCGAAGTTACCACTGGGCTCAAGGTAGTTG 2352233 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | |||||||| || |||||||| || || | ||||||||| || ||||| | || Sbjct 2352234 ATGTTGTTGGTACCGACAAAGTTCTGCGCAAGGTTGACAATAGTTCCTTGCATAGAAGCT 2352293 Query 117446 TCACCATGGTGATACGCCGTCTGCTCC-GCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504 ||||| || ||| | || | ||| | ||| | || || |||| | | ||||| | Sbjct 2352294 TCACCGTGAGCATAGTCGGTG-GATCCAGAGACGGAACCTGCAAGCTCAACGACCTTGAC 2352352 Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564 ||| | | | ||| | ||| |||| ||| | ||||| ||||||| |||||||| Sbjct 2352353 ATCTTTCTTGATGTTTCGCCTGAAACAGGTATACAGAACCTTTCGCTGACCGGGCTTCAG 2352412 Query 117565 ACCATCCGCCACGTGAGGG-ATCGAACGC 117592 |||||| | ||| ||||| ||||| ||| Sbjct 2352413 ACCATCGACAACG-GAGGGAATCGATCGC 2352440 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055 ||||||||||||||||||||||| |||| |||| ||||||| ||| | Sbjct 2353964 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 2354023 Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115 | || |||||| | |||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 2354024 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCGTTACGACC 2354083 Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 |||||| || ||||| | ||||| |||||||||| || | |||||| |||||||| Sbjct 2354084 ACCGGTGACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 2354143 Query 119176 GAGCTCGGG 119184 | ||| || Sbjct 2354144 CATCTCTGG 2354152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214932928800